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Hid1 HID1 domain containing [ Mus musculus (house mouse) ]

Gene ID: 217310, updated on 11-Apr-2024

Summary

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Official Symbol
Hid1provided by MGI
Official Full Name
HID1 domain containingprovided by MGI
Primary source
MGI:MGI:2445087
See related
Ensembl:ENSMUSG00000034586 AllianceGenome:MGI:2445087
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C630004H02Rik
Summary
Predicted to be located in Golgi apparatus; cytoplasmic microtubule; and cytosol. Predicted to be extrinsic component of Golgi membrane. Predicted to be active in Golgi medial cisterna; Golgi trans cisterna; and membrane. Orthologous to human HID1 (HID1 domain containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in colon adult (RPKM 50.9), stomach adult (RPKM 40.3) and 18 other tissues See more
Orthologs
human all
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Genomic context

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See Hid1 in Genome Data Viewer
Location:
11 E2; 11 80.84 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (115238531..115261087, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (115347705..115367756, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene otopetrin 2 Neighboring gene USH1 protein network component sans Neighboring gene STARR-seq mESC enhancer starr_31156 Neighboring gene otopetrin 3 Neighboring gene predicted gene, 53654 Neighboring gene cerebellar degeneration-related protein 2-like Neighboring gene predicted gene, 32013

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. HID-1 is required for homotypic fusion of immature secretory granules during maturation. Du W, et al. Elife, 2016 Oct 18. PMID 27751232, Free PMC Article
  2. Mutations in a new scaffold protein Sans cause deafness in Jackson shaker mice. Kikkawa Y, et al. Hum Mol Genet, 2003 Mar 1. PMID 12588793
  3. A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies. Breslow DK, et al. Nat Genet, 2018 Mar. PMID 29459677, Free PMC Article
  4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
is_active_in Golgi medial cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi medial cisterna ISO
Inferred from Sequence Orthology
more info
  
is_active_in Golgi trans cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi trans cisterna ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic microtubule ISO
Inferred from Sequence Orthology
more info
  
located_in cytoplasmic side of Golgi membrane ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein HID1
Names
HID1 domain-containing protein
UPF0663 transmembrane protein C17orf28 homolog
protein hid-1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346774.1 → NP_001333703.1  protein HID1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK138882, AL603828, AW047036, CJ153052
    Consensus CDS
    CCDS83927.1
    UniProtKB/TrEMBL
    Q3UU20
    Related
    ENSMUSP00000043789.7, ENSMUST00000044152.13

  2. NM_175454.2 → NP_780663.1  protein HID1 isoform 1

    See identical proteins and their annotated locations for NP_780663.1

    Status: VALIDATED

    Source sequence(s)
    AL603828
    Consensus CDS
    CCDS25630.1
    UniProtKB/Swiss-Prot
    A2A6S8, Q8C8V6, Q8R1F6
    Related
    ENSMUSP00000102152.3, ENSMUST00000106542.9
    Conserved Domains (1) summary
    pfam12722
    Location:1 → 785
    Hid1; High-temperature-induced dauer-formation protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    115238531..115261087 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314488.3 → XP_017169977.1  protein HID1 isoform X1

    Conserved Domains (1) summary
    cl15483
    Location:2 → 584
    Hid1; High-temperature-induced dauer-formation protein

  2. XM_030245892.2 → XP_030101752.1  protein HID1 isoform X1

    Conserved Domains (1) summary
    cl15483
    Location:2 → 584
    Hid1; High-temperature-induced dauer-formation protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8R1F6.1 GenPept UniProtKB/Swiss-Prot:Q8R1F6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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