U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Prr15l proline rich 15-like [ Mus musculus (house mouse) ]

Gene ID: 217138, updated on 5-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
Prr15lprovided by MGI
Official Full Name
proline rich 15-likeprovided by MGI
Primary source
MGI:MGI:2387599
See related
Ensembl:ENSMUSG00000047040 AllianceGenome:MGI:2387599
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Atad4; E230006A12Rik
Summary
Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; hemolymphoid system gland; and sensory organ. Orthologous to human PRR15L (proline rich 15 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in colon adult (RPKM 63.3), large intestine adult (RPKM 44.2) and 6 other tissues See more
Orthologs
human all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
11 D; 11 60.16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (96816987..96826474)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (96926161..96937833)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_30571 Neighboring gene predicted gene, 38961 Neighboring gene VISTA enhancer mm1675 Neighboring gene CDK5 regulatory subunit associated protein 3 Neighboring gene STARR-positive B cell enhancer ABC_E202 Neighboring gene predicted gene 11525 Neighboring gene STARR-seq mESC enhancer starr_30572 Neighboring gene RIKEN cDNA D030028A08 gene Neighboring gene STARR-positive B cell enhancer ABC_E2367 Neighboring gene pyridoxine 5'-phosphate oxidase Neighboring gene Sp2 transcription factor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

Go to the top of the page Help

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC37495

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
proline-rich protein 15-like protein
Names
ATPase family, AAA domain containing 4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_146026.2 → NP_666138.1  proline-rich protein 15-like protein

    See identical proteins and their annotated locations for NP_666138.1

    Status: VALIDATED

    Source sequence(s)
    AL596384
    Consensus CDS
    CCDS25307.1
    UniProtKB/Swiss-Prot
    Q8C307, Q8JZM2
    Related
    ENSMUSP00000103262.4, ENSMUST00000107636.4
    Conserved Domains (1) summary
    pfam15321
    Location:6 → 87
    ATAD4; ATPase family AAA domain containing 4

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    96816987..96826474
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245864.1 → XP_030101724.1  proline-rich protein 15-like protein isoform X1

    UniProtKB/Swiss-Prot
    Q8C307, Q8JZM2
    Conserved Domains (1) summary
    pfam15321
    Location:6 → 87
    ATAD4; ATPase family AAA domain containing 4

  2. XM_030245865.2 → XP_030101725.1  proline-rich protein 15-like protein isoform X1

    UniProtKB/Swiss-Prot
    Q8C307, Q8JZM2
    Related
    ENSMUSP00000103259.2, ENSMUST00000107633.2
    Conserved Domains (1) summary
    pfam15321
    Location:6 → 87
    ATAD4; ATPase family AAA domain containing 4

  3. XM_030245866.2 → XP_030101726.1  proline-rich protein 15-like protein isoform X1

    UniProtKB/Swiss-Prot
    Q8C307, Q8JZM2
    Related
    ENSMUSP00000056614.6, ENSMUST00000054311.6
    Conserved Domains (1) summary
    pfam15321
    Location:6 → 87
    ATAD4; ATPase family AAA domain containing 4

  4. XM_030245863.2 → XP_030101723.1  proline-rich protein 15-like protein isoform X1

    UniProtKB/Swiss-Prot
    Q8C307, Q8JZM2
    Related
    ENSMUSP00000056647.6, ENSMUST00000062172.6
    Conserved Domains (1) summary
    pfam15321
    Location:6 → 87
    ATAD4; ATPase family AAA domain containing 4
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8JZM2.1 GenPept UniProtKB/Swiss-Prot:Q8JZM2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous