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Elobl elongin B-like [ Mus musculus (house mouse) ]

Gene ID: 217066, updated on 8-Feb-2024

Summary

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Official Symbol
Eloblprovided by MGI
Official Full Name
elongin B-likeprovided by MGI
Primary source
MGI:MGI:1860403
See related
Ensembl:ENSMUSG00000057534 AllianceGenome:MGI:1860403
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tceb2l; Gm15698
Summary
Predicted to be part of VCB complex and elongin complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in ovary adult (RPKM 7.4) and genital fat pad adult (RPKM 1.3) See more
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Genomic context

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Location:
11 C; 11 54.34 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88855484..88857782, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (88964658..88966931, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase 1, opposite strand Neighboring gene predicted gene, 23507 Neighboring gene serine carboxypeptidase 1 Neighboring gene STARR-seq mESC enhancer starr_30370 Neighboring gene STARR-seq mESC enhancer starr_30374 Neighboring gene STARR-positive B cell enhancer ABC_E3993 Neighboring gene STARR-seq mESC enhancer starr_30376 Neighboring gene STARR-seq mESC enhancer starr_30377 Neighboring gene STARR-positive B cell enhancer ABC_E10705 Neighboring gene transcription elongation factor B (SIII), polypeptide 2 pseudogene Neighboring gene coilin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Structure and characterization of the murine p80 coilin gene, Coil. Tucker KE, et al. J Struct Biol, 2000 Apr. PMID 10806077
  2. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
  3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
part_of VCB complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of elongin complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
elongin B-like
Names
transcription elongation factor B (SIII), polypeptide 2 (18 kDa, elongin B),-like
transcription elongation factor B (SIII), polypeptide 2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001360780.1 → NP_001347709.1  elongin B-like

    Status: VALIDATED

    Source sequence(s)
    DV653579, DV655088
    Consensus CDS
    CCDS88218.1
    UniProtKB/TrEMBL
    A6PWE0
    Related
    ENSMUSP00000113104.2, ENSMUST00000121228.2
    Conserved Domains (1) summary
    cd01788
    Location:2 → 94
    Ubl_ElonginB; ubiquitin-like (Ubl) domain found in transcription elongation factor B (Elongin B) and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    88855484..88857782 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245855.2 → XP_030101715.1  elongin B-like isoform X1

    UniProtKB/TrEMBL
    A6PWE0
    Related
    ENSMUSP00000103534.2, ENSMUST00000061938.14
    Conserved Domains (1) summary
    cd01788
    Location:2 → 94
    Ubl_ElonginB; ubiquitin-like (Ubl) domain found in transcription elongation factor B (Elongin B) and similar proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001025564.1: Suppressed sequence

    Description
    NM_001025564.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.

  2. NR_003564.1: Suppressed sequence

    Description
    NR_003564.1: This RefSeq was removed because it is now thought this gene encodes a protein.
Nucleotide Protein Strain
Heading Accession and Version

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