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Trgv6 T cell receptor gamma, variable 6 [ Mus musculus (house mouse) ]

Gene ID: 21640, updated on 8-Feb-2024

Summary

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Official Symbol
Trgv6provided by MGI
Official Full Name
T cell receptor gamma, variable 6provided by MGI
Primary source
MGI:MGI:98636
See related
IMGT/GENE-DB:TRGV6; AllianceGenome:MGI:98636
Gene type
other
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tcrg-V6
Summary
Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
13 A2; 13 6.89 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (19374538..19375099)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (19190368..19190929)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 31887 Neighboring gene STARR-seq mESC enhancer starr_33788 Neighboring gene T cell receptor gamma, variable 7 Neighboring gene T cell receptor gamma chain Neighboring gene STARR-seq mESC enhancer starr_33789 Neighboring gene T cell receptor gamma, variable 4 Neighboring gene T cell receptor gamma, variable 5 Neighboring gene T cell receptor gamma joining 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence that murine V gamma 5 and V gamma 6 gamma delta-TCR+ lymphocytes are derived from a common distinct lineage. Heyborne K, et al. J Immunol, 1993 Nov 1. PMID 8409415
  2. Promoter region of mouse Tcrg genes. Ishimi Y, et al. Immunogenetics, 1996. PMID 8537125
  3. Diversity, rearrangement, and expression of murine T cell gamma genes. Garman RD, et al. Cell, 1986 Jun 6. PMID 3486721
  4. Mapping genomic organization by field inversion and two-dimensional gel electrophoresis: application to the murine T-cell receptor gamma gene family. Woolf T, et al. Nucleic Acids Res, 1988 May 11. PMID 3375073, Free PMC Article
  5. Conservation of Tcrg-V5 and limited allelic sequence polymorphism of the other Tcrg-V genes used by mouse tissue-specific gd-T lymphocytes. Roger T, et al. Immunogenetics, 1996. PMID 8550103

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Gene Ontology Provided by MGI

Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007033.1 

    Range
    12827..13388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    19374538..19375099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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