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D930020B18Rik RIKEN cDNA D930020B18 gene [ Mus musculus (house mouse) ]

Gene ID: 216393, updated on 5-Mar-2024

Summary

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Official Symbol
D930020B18Rikprovided by MGI
Official Full Name
RIKEN cDNA D930020B18 geneprovided by MGI
Primary source
MGI:MGI:2442001
See related
Ensembl:ENSMUSG00000047642 AllianceGenome:MGI:2442001
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1500017I17Rik
Summary
Is expressed in epididymis; olfactory epithelium; and vomeronasal organ. Orthologous to human C12orf56 (chromosome 12 open reading frame 56). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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Location:
10 D2; 10 69.89 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (121477006..121530239)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (121641101..121694334)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene TANK-binding kinase 1 Neighboring gene STARR-positive B cell enhancer ABC_E1129 Neighboring gene STARR-positive B cell enhancer ABC_E9355 Neighboring gene STARR-seq mESC enhancer starr_28102 Neighboring gene exportin, tRNA (nuclear export receptor for tRNAs) Neighboring gene predicted gene, 35816 Neighboring gene STARR-seq mESC enhancer starr_28105 Neighboring gene predicted gene, 35865 Neighboring gene KICSTOR subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C12orf56 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177335.4 → NP_796309.3  uncharacterized protein C12orf56 homolog

    Status: VALIDATED

    Source sequence(s)
    AC124992
    Consensus CDS
    CCDS36074.2
    UniProtKB/TrEMBL
    D3Z3G0
    Related
    ENSMUSP00000113963.2, ENSMUST00000120642.9
    Conserved Domains (1) summary
    pfam15087
    Location:12 → 616
    DUF4551; Protein of unknown function (DUF4551)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    121477006..121530239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513551.3 → XP_006513614.1  uncharacterized protein C12orf56 homolog isoform X1

    Conserved Domains (1) summary
    pfam15087
    Location:12 → 618
    DUF4551; Protein of unknown function (DUF4551)

  2. XM_036155759.1 → XP_036011652.1  uncharacterized protein C12orf56 homolog isoform X2

    Conserved Domains (1) summary
    pfam15087
    Location:12 → 616
    DUF4551; Protein of unknown function (DUF4551)

  3. XM_006513552.3 → XP_006513615.1  uncharacterized protein C12orf56 homolog isoform X3

    Conserved Domains (1) summary
    pfam15087
    Location:12 → 612
    DUF4551; Protein of unknown function (DUF4551)

  4. XM_006513555.3 → XP_006513618.1  uncharacterized protein C12orf56 homolog isoform X4

    Conserved Domains (1) summary
    pfam15087
    Location:12 → 319
    DUF4551; Protein of unknown function (DUF4551)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8CCC3.1 GenPept UniProtKB/Swiss-Prot:Q8CCC3

Gene LinkOut

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