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Ccdc28a coiled-coil domain containing 28A [ Mus musculus (house mouse) ]

Gene ID: 215814, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc28aprovided by MGI
Official Full Name
coiled-coil domain containing 28Aprovided by MGI
Primary source
MGI:MGI:2443508
See related
Ensembl:ENSMUSG00000059554 AllianceGenome:MGI:2443508
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700009P13Rik
Summary
Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and respiratory system. Orthologous to human CCDC28A (coiled-coil domain containing 28A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 26.8), cerebellum adult (RPKM 11.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Ccdc28a in Genome Data Viewer
Location:
10 A3; 10 7.53 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (18089424..18110940, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (18213676..18235805, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25888 Neighboring gene RalBP1 associated Eps domain containing protein Neighboring gene STARR-seq mESC enhancer starr_25889 Neighboring gene epithelial cell transforming sequence 2 oncogene-like Neighboring gene STARR-positive B cell enhancer ABC_E8992 Neighboring gene STARR-positive B cell enhancer mm9_chr10:17930879-17931180 Neighboring gene STARR-positive B cell enhancer ABC_E8325 Neighboring gene predicted gene 10827 Neighboring gene predicted gene, 53616 Neighboring gene NHS like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Microarray analysis of Foxa2 mutant mouse embryos reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives. Tamplin OJ, et al. BMC Genomics, 2008 Oct 30. PMID 18973680, Free PMC Article
  2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3) 
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC19351

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 28A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001346751.1 → NP_001333680.1  coiled-coil domain-containing protein 28A isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC153562
    Consensus CDS
    CCDS87966.1
    UniProtKB/TrEMBL
    Q8CEI3
    Related
    ENSMUSP00000050107.9, ENSMUST00000052648.9

  2. NM_144820.4 → NP_659069.2  coiled-coil domain-containing protein 28A isoform 1

    See identical proteins and their annotated locations for NP_659069.2

    Status: VALIDATED

    Source sequence(s)
    AK148447, AW048156
    Consensus CDS
    CCDS35852.1
    UniProtKB/TrEMBL
    Q3UFK1
    Related
    ENSMUSP00000079671.7, ENSMUST00000080860.13
    Conserved Domains (1) summary
    pfam13270
    Location:83 → 167
    DUF4061; Domain of unknown function (DUF4061)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    18089424..18110940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030245002.2 → XP_030100862.1  coiled-coil domain-containing protein 28A isoform X1

    UniProtKB/TrEMBL
    G3UX80, G3UZ16
    Related
    ENSMUSP00000133585.2, ENSMUST00000173243.8
    Conserved Domains (1) summary
    pfam13270
    Location:29 → 114
    DUF4061; Domain of unknown function (DUF4061)

RNA

  1. XR_003948656.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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