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Ulbp3 UL16 binding protein 3 [ Mus musculus (house mouse) ]

Gene ID: 215728, updated on 8-Feb-2024

Summary

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Official Symbol
Ulbp3provided by MGI
Official Full Name
UL16 binding protein 3provided by MGI
Primary source
MGI:MGI:3588256
See related
Ensembl:ENSMUSG00000071434 AllianceGenome:MGI:3588256
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9230019H11Rik
Summary
Predicted to enable natural killer cell lectin-like receptor binding activity. Predicted to be involved in natural killer cell activation and natural killer cell mediated cytotoxicity. Predicted to be anchored component of plasma membrane. Orthologous to human ULBP3 (UL16 binding protein 3). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward genital fat pad adult (RPKM 1.6) See more
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Genomic context

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Location:
10 A1; 10 2.17 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (3069841..3079546)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (3119841..3129546)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30674 Neighboring gene RIKEN cDNA B020014A21 gene Neighboring gene hyaluronic acid binding protein 4 pseudogene Neighboring gene STARR-seq mESC enhancer starr_25681 Neighboring gene copine III pseudogene Neighboring gene STARR-seq mESC enhancer starr_25680 Neighboring gene STARR-seq mESC enhancer starr_25679 Neighboring gene STARR-seq mESC enhancer starr_25678 Neighboring gene STARR-seq mESC enhancer starr_25677 Neighboring gene predicted gene, 51789

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables natural killer cell lectin-like receptor binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in natural killer cell activation ISO
Inferred from Sequence Orthology
more info
  
involved_in natural killer cell mediated cytotoxicity ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC215728

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033977.2 → NP_001029149.1  uncharacterized protein LOC215728 precursor

    Status: VALIDATED

    Source sequence(s)
    AC168222, AK136660
    UniProtKB/TrEMBL
    Q3UW27
    Related
    ENSMUST00000095874.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    3069841..3079546
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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