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Ccdc9b coiled-coil domain containing 9B [ Mus musculus (house mouse) ]

Gene ID: 214239, updated on 5-Mar-2024

Summary

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Official Symbol
Ccdc9bprovided by MGI
Official Full Name
coiled-coil domain containing 9Bprovided by MGI
Primary source
MGI:MGI:2685199
See related
Ensembl:ENSMUSG00000045838 AllianceGenome:MGI:2685199
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm353; A430105I19Rik
Summary
Is expressed in heart. Orthologous to human CCDC9B (coiled-coil domain containing 9B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in lung adult (RPKM 9.6), bladder adult (RPKM 6.8) and 22 other tissues See more
Orthologs
human all
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Genomic context

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See Ccdc9b in Genome Data Viewer
Location:
2 E5; 2 59.45 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (118584626..118593421, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (118754145..118762947, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene phospholipase C, beta 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118554101-118554254 Neighboring gene STARR-positive B cell enhancer ABC_E7850 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118556392-118556593 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118571143-118571444 Neighboring gene InaF motif containing 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118588340-118588523 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118590344-118590645 Neighboring gene predicted gene, 54146 Neighboring gene proline/histidine/glycine-rich 1 Neighboring gene dispatched RND transporter family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global expression profile of highly enriched cardiomyocytes derived from human embryonic stem cells. Xu XQ, et al. Stem Cells, 2009 Sep. PMID 19658189
  2. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
  3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 9B
Names
uncharacterized protein C15orf52 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001982.3 → NP_001001982.3  coiled-coil domain-containing protein 9B

    Status: VALIDATED

    Source sequence(s)
    AL772255
    Consensus CDS
    CCDS50670.1
    UniProtKB/Swiss-Prot
    A3KGF9, Q3UV54, Q6DI90
    UniProtKB/TrEMBL
    A0A8Q0K7A4
    Related
    ENSMUSP00000051853.10, ENSMUST00000059997.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    118584626..118593421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499105.5 → XP_006499168.1  coiled-coil domain-containing protein 9B isoform X1

    UniProtKB/Swiss-Prot
    A3KGF9, Q3UV54, Q6DI90
    Conserved Domains (1) summary
    pfam15266
    Location:129 → 303
    DUF4594; Domain of unknown function (DUF4594)

  2. XM_011239421.4 → XP_011237723.1  coiled-coil domain-containing protein 9B isoform X2

    Conserved Domains (1) summary
    pfam15266
    Location:186 → 285
    DUF4594; Domain of unknown function (DUF4594)

RNA

  1. XR_374437.5 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A3KGF9.1 GenPept UniProtKB/Swiss-Prot:A3KGF9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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