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Ttc24 tetratricopeptide repeat domain 24 [ Mus musculus (house mouse) ]

Gene ID: 214191, updated on 5-Mar-2024

Summary

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Official Symbol
Ttc24provided by MGI
Official Full Name
tetratricopeptide repeat domain 24provided by MGI
Primary source
MGI:MGI:2443841
See related
Ensembl:ENSMUSG00000121872 AllianceGenome:MGI:2443841
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A430025D11Rik
Summary
Orthologous to human TTC24 (tetratricopeptide repeat domain 24). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 18.3) See more
Orthologs
human all
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Genomic context

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Location:
3 F1; 3 38.78 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (87976717..87985611, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (88069410..88078304, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E10191 Neighboring gene G patch domain containing 4 Neighboring gene NAD(P)HX epimerase Neighboring gene STARR-positive B cell enhancer ABC_E10192 Neighboring gene IQ motif containing GTPase activating protein 3 Neighboring gene STARR-positive B cell enhancer ABC_E10193 Neighboring gene STARR-positive B cell enhancer ABC_E1621 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:87942601-87942788 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:87945923-87946106 Neighboring gene STARR-positive B cell enhancer ABC_E2075 Neighboring gene myocyte enhancer factor 2D Neighboring gene RIKEN cDNA 1700113A16 gene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC58815

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat protein 24
Names
TPR repeat protein 24

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172526.3 → NP_766114.1  tetratricopeptide repeat protein 24

    See identical proteins and their annotated locations for NP_766114.1

    Status: PROVISIONAL

    Source sequence(s)
    AC137525
    Consensus CDS
    CCDS17465.1
    UniProtKB/Swiss-Prot
    Q7TPM2, Q8BYG0
    UniProtKB/TrEMBL
    B9EJT8
    Related
    ENSMUST00000238487.2
    Conserved Domains (3) summary
    sd00006
    Location:72 → 100
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:152 → 184
    TPR_1; Tetratricopeptide repeat
    pfam13424
    Location:113 → 183
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    87976717..87985611 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BYG0.1 GenPept UniProtKB/Swiss-Prot:Q8BYG0

Gene LinkOut

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