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Tmem82 transmembrane protein 82 [ Mus musculus (house mouse) ]

Gene ID: 213989, updated on 5-Mar-2024

Summary

Official Symbol
Tmem82provided by MGI
Official Full Name
transmembrane protein 82provided by MGI
Primary source
MGI:MGI:2384869
See related
Ensembl:ENSMUSG00000043085 AllianceGenome:MGI:2384869
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM82 (transmembrane protein 82). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 52.6), duodenum adult (RPKM 37.9) and 9 other tissues See more
Orthologs
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Genomic context

Location:
4 D3; 4 74.64 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (141341544..141345944, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (141614233..141618633, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA B330016D10 gene Neighboring gene STARR-positive B cell enhancer ABC_E6251 Neighboring gene STARR-positive B cell enhancer ABC_E6252 Neighboring gene STARR-seq mESC enhancer starr_11919 Neighboring gene STARR-seq mESC enhancer starr_11920 Neighboring gene STARR-seq mESC enhancer starr_11921 Neighboring gene STARR-positive B cell enhancer ABC_E1289 Neighboring gene filamin binding LIM protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E1662 Neighboring gene STARR-seq mESC enhancer starr_11923 Neighboring gene expressed sequence AI507597 Neighboring gene STARR-positive B cell enhancer mm9_chr4:141180986-141181286 Neighboring gene solute carrier family 25, member 34 Neighboring gene pleckstrin homology domain containing, family M (with RUN domain) member 2 Neighboring gene predicted gene, 54266

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

Markers

Clone Names

  • MGC37938

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145987.2NP_666099.2  transmembrane protein 82

    See identical proteins and their annotated locations for NP_666099.2

    Status: VALIDATED

    Source sequence(s)
    AK085940, AK162322, BU961312
    Consensus CDS
    CCDS18877.1
    UniProtKB/Swiss-Prot
    A2ADF5, Q8R115
    Related
    ENSMUSP00000058412.9, ENSMUST00000053263.9
    Conserved Domains (1) summary
    pfam15816
    Location:18313
    TMEM82; Transmembrane protein 82

RNA

  1. NR_151462.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK085940, AL670446, BB798487, BY720765

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    141341544..141345944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)