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Zswim4 zinc finger SWIM-type containing 4 [ Mus musculus (house mouse) ]

Gene ID: 212168, updated on 5-Mar-2024

Summary

Official Symbol
Zswim4provided by MGI
Official Full Name
zinc finger SWIM-type containing 4provided by MGI
Primary source
MGI:MGI:2443726
See related
Ensembl:ENSMUSG00000035671 AllianceGenome:MGI:2443726
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D330002I24; E130119J17Rik
Summary
Predicted to enable zinc ion binding activity. Predicted to be part of Cul2-RING ubiquitin ligase complex. Is expressed in dorsal root ganglion. Orthologous to human ZSWIM4 (zinc finger SWIM-type containing 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 36.0), whole brain E14.5 (RPKM 21.2) and 26 other tissues See more
Orthologs
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Genomic context

Location:
8 C2; 8 40.59 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (84937571..84963671, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (84210942..84237042, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene microRNA 3074-2 Neighboring gene microRNA 24-2 Neighboring gene microRNA 27a Neighboring gene STARR-positive B cell enhancer ABC_E59 Neighboring gene DNA segment, Chr 8, ERATO Doi 738, expressed Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene YJU2 splicing factor homolog B Neighboring gene STARR-positive B cell enhancer ABC_E297

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of Cul2-RING ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
zinc finger SWIM domain-containing protein 4
Names
zinc finger, SWIM domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172503.3NP_766091.2  zinc finger SWIM domain-containing protein 4

    See identical proteins and their annotated locations for NP_766091.2

    Status: PROVISIONAL

    Source sequence(s)
    AC122794, AC159266
    Consensus CDS
    CCDS22471.1
    UniProtKB/Swiss-Prot
    Q8BPN9, Q8C7B8
    UniProtKB/TrEMBL
    Q3U265
    Related
    ENSMUSP00000040078.6, ENSMUST00000039480.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    84937571..84963671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)