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Cfap46 cilia and flagella associated protein 46 [ Mus musculus (house mouse) ]

Gene ID: 212124, updated on 9-May-2024

Summary

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Official Symbol
Cfap46provided by MGI
Official Full Name
cilia and flagella associated protein 46provided by MGI
Primary source
MGI:MGI:2444387
See related
Ensembl:ENSMUSG00000049571 AllianceGenome:MGI:2444387
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm170; Ttc40; 9330101J02Rik; E030019B06Rik
Summary
Orthologous to human CFAP46 (cilia and flagella associated protein 46). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 9.4), lung adult (RPKM 1.3) and 3 other tissues See more
Orthologs
human all
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Genomic context

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Location:
7 F4; 7 84.57 cM
Exon count:
60
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (139180830..139264701, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (139600914..139684787, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-5-phosphatase A Neighboring gene glycosylated lysosomal membrane protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_20426 Neighboring gene STARR-seq mESC enhancer starr_20427 Neighboring gene predicted gene, 33031 Neighboring gene NK6 homeobox 2 Neighboring gene STARR-positive B cell enhancer mm9_chr7:146833912-146834213 Neighboring gene STARR-seq mESC enhancer starr_20429 Neighboring gene STARR-positive B cell enhancer mm9_chr7:146870578-146870879 Neighboring gene NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 pseudogene Neighboring gene predicted gene, 32680 Neighboring gene ribosomal protein L21-ps13 Neighboring gene STARR-seq mESC enhancer starr_20430 Neighboring gene STARR-seq mESC enhancer starr_20432 Neighboring gene ribosomal protein L24 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  

General protein information

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Preferred Names
cilia- and flagella-associated protein 46
Names
cilia and flagella protein 46

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302546.1 → NP_001289475.1  cilia- and flagella-associated protein 46

    Status: VALIDATED

    Source sequence(s)
    AC112670, AC141643, AK033851
    Consensus CDS
    CCDS57592.2
    UniProtKB/TrEMBL
    E9Q2C0
    Related
    ENSMUSP00000120186.3, ENSMUST00000129990.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    139180830..139264701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017322097.3 → XP_017177586.1  cilia- and flagella-associated protein 46 isoform X1

    UniProtKB/TrEMBL
    Q8BZQ3

  2. XM_036152877.1 → XP_036008770.1  cilia- and flagella-associated protein 46 isoform X2

    UniProtKB/TrEMBL
    Q8BZQ3

  3. XM_017322099.3 → XP_017177588.1  cilia- and flagella-associated protein 46 isoform X3

    UniProtKB/TrEMBL
    Q8BZQ3

  4. XM_017322100.2 → XP_017177589.1  cilia- and flagella-associated protein 46 isoform X4

    UniProtKB/TrEMBL
    Q8BZQ3

  5. XM_017322101.1 → XP_017177590.1  cilia- and flagella-associated protein 46 isoform X5

    UniProtKB/TrEMBL
    Q8BZQ3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001243018.1: Suppressed sequence

    Description
    NM_001243018.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  2. NM_177212.2: Suppressed sequence

    Description
    NM_177212.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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