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Zfp1008 zinc finger protein 1008 [ Mus musculus (house mouse) ]

Gene ID: 211378, updated on 8-Feb-2024

Summary

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Official Symbol
Zfp1008provided by MGI
Official Full Name
zinc finger protein 1008provided by MGI
Primary source
MGI:MGI:2443901
See related
Ensembl:ENSMUSG00000072066 AllianceGenome:MGI:2443901
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9330128I06; 6720489N17Rik
Expression
Broad expression in whole brain E14.5 (RPKM 1.6), CNS E14 (RPKM 1.5) and 16 other tissues See more
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Genomic context

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Location:
13 B3; 13 32.74 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (62747134..62783726, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (62598066..62638257, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 934 Neighboring gene STARR-seq mESC enhancer starr_34773 Neighboring gene predicted gene, 24095 Neighboring gene predicted gene, 38639 Neighboring gene STARR-positive B cell enhancer mm9_chr13:62725440-62725741 Neighboring gene predicted gene, 36298 Neighboring gene STARR-seq mESC enhancer starr_34777 Neighboring gene pluripotency associated transcript 25 Neighboring gene calcium binding and coiled-coil domain 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC211378

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324406.1 → NP_001311335.1  uncharacterized protein LOC211378 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CT030240

  2. NM_173381.1 → NP_775557.1  uncharacterized protein LOC211378 isoform 1

    See identical proteins and their annotated locations for NP_775557.1

    Status: VALIDATED

    Source sequence(s)
    AK033001, AK033958
    Consensus CDS
    CCDS79202.1
    UniProtKB/TrEMBL
    F7A5Y7, Q8BGU1
    Related
    ENSMUSP00000144207.2, ENSMUST00000201563.4
    Conserved Domains (2) summary
    smart00349
    Location:4 → 44
    KRAB; krueppel associated box
    pfam01352
    Location:4 → 43
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    62747134..62783726 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315473.3 → XP_017170962.1  uncharacterized protein LOC211378 isoform X1

    UniProtKB/TrEMBL
    F7A5Y7
    Conserved Domains (1) summary
    pfam01352
    Location:20 → 60
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

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