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B3gntl1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 [ Mus musculus (house mouse) ]

Gene ID: 210004, updated on 11-Apr-2024

Summary

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Official Symbol
B3gntl1provided by MGI
Official Full Name
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1provided by MGI
Primary source
MGI:MGI:2441705
See related
Ensembl:ENSMUSG00000046605 AllianceGenome:MGI:2441705
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6030413G23Rik
Summary
Predicted to enable glycosyltransferase activity. Orthologous to human B3GNTL1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 3.9), limb E14.5 (RPKM 2.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
11 E2; 11 86.14 cM
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (121507023..121563985, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (121616197..121673160, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr11:121312999-121313300 Neighboring gene fructosamine 3 kinase Neighboring gene tubulin-specific chaperone d Neighboring gene STARR-seq mESC enhancer starr_31381 Neighboring gene zinc finger protein 750 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:121420970-121421165 Neighboring gene STARR-seq mESC enhancer starr_31382 Neighboring gene predicted gene, 53659 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:121534171-121534280 Neighboring gene STARR-positive B cell enhancer mm9_chr11:121534352-121534653 Neighboring gene ribosomal protein, large, P0 pseudogene Neighboring gene meteorin, glial cell differentiation regulator-like Neighboring gene predicted gene 12589 Neighboring gene predicted gene, 30338

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
  2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Markers

Homology

Clone Names

  • MGC113804, MGC159329

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables tRNA-queuosine(34) galactosyltransferase activity ISO
Inferred from Sequence Orthology
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in regulation of translation ISO
Inferred from Sequence Orthology
more info
  
involved_in tRNA modification ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1
Names
BGnT-like protein 1
beta1,3-N-acetylglucosaminyltransferase-like protein 1
beta3Gn-T-like protein 1
beta3GnTL1
ortholog of human UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 B3GNTL1
NP_848779.2
XP_006532815.1
XP_006532816.1
XP_006532817.1
XP_006532818.1
XP_006532819.1
XP_011247161.1
XP_011247162.1
XP_017169904.1
XP_017169905.1
XP_030101612.1
XP_030101613.1
XP_036012388.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178664.5 → NP_848779.2  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1

    See identical proteins and their annotated locations for NP_848779.2

    Status: VALIDATED

    Source sequence(s)
    AK031361, BB641432, BC022739
    Consensus CDS
    CCDS25780.1
    UniProtKB/Swiss-Prot
    B7ZNC6, Q3U129, Q5HZJ4, Q8BLR1, Q8C0H0, Q8R1Y3
    Related
    ENSMUSP00000068590.8, ENSMUST00000067399.14
    Conserved Domains (1) summary
    cd06913
    Location:18 → 236
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    121507023..121563985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006532753.5 → XP_006532816.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_006532816.1

    Conserved Domains (1) summary
    cd06913
    Location:1 → 203
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

  2. XM_006532756.3 → XP_006532819.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X5

    See identical proteins and their annotated locations for XP_006532819.1

    Conserved Domains (1) summary
    cl11394
    Location:1 → 62
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_006532754.5 → XP_006532817.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X3

    Conserved Domains (1) summary
    cl11394
    Location:9 → 134
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_006532755.5 → XP_006532818.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X4

    See identical proteins and their annotated locations for XP_006532818.1

    Conserved Domains (1) summary
    cl11394
    Location:1 → 123
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_036156495.1 → XP_036012388.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X3

    Conserved Domains (1) summary
    cl11394
    Location:9 → 134
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_017314415.3 → XP_017169904.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X3

    Conserved Domains (1) summary
    cl11394
    Location:9 → 134
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  7. XM_006532752.4 → XP_006532815.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006532815.1

    UniProtKB/Swiss-Prot
    B7ZNC6, Q3U129, Q5HZJ4, Q8BLR1, Q8C0H0, Q8R1Y3
    Conserved Domains (1) summary
    cd06913
    Location:18 → 236
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

  8. XM_030245752.2 → XP_030101612.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X2

    Conserved Domains (1) summary
    cd06913
    Location:1 → 203
    beta3GnTL1_like; Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

  9. XM_017314416.3 → XP_017169905.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X4

    Conserved Domains (1) summary
    cl11394
    Location:1 → 123
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  10. XM_011248859.4 → XP_011247161.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X4

    See identical proteins and their annotated locations for XP_011247161.1

    Conserved Domains (1) summary
    cl11394
    Location:1 → 123
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  11. XM_011248860.3 → XP_011247162.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X5

    See identical proteins and their annotated locations for XP_011247162.1

    Conserved Domains (1) summary
    cl11394
    Location:1 → 62
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  12. XM_030245753.2 → XP_030101613.1  UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 isoform X3

    Conserved Domains (1) summary
    cl11394
    Location:9 → 134
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3U129.1 GenPept UniProtKB/Swiss-Prot:Q3U129

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