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Stip1 stress-induced phosphoprotein 1 [ Mus musculus (house mouse) ]

Gene ID: 20867, updated on 5-Mar-2024

Summary

Official Symbol
Stip1provided by MGI
Official Full Name
stress-induced phosphoprotein 1provided by MGI
Primary source
MGI:MGI:109130
See related
Ensembl:ENSMUSG00000024966 AllianceGenome:MGI:109130
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hop; p60; Sti1
Summary
Predicted to enable chaperone binding activity; heat shock protein binding activity; and protein C-terminus binding activity. Acts upstream of or within cellular response to interleukin-7. Located in myelin sheath. Is expressed in several structures, including central nervous system; liver; lung; metanephros; and notochord. Orthologous to human STIP1 (stress induced phosphoprotein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 77.9), placenta adult (RPKM 65.0) and 28 other tissues See more
Orthologs
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Genomic context

See Stip1 in Genome Data Viewer
Location:
19 A; 19 5.15 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (6998064..7017394, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (7020696..7040026, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 22 Neighboring gene tRNA phosphotransferase 1 Neighboring gene fermitin family member 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:7092729-7092882 Neighboring gene predicted gene, 54052 Neighboring gene STARR-seq mESC enhancer starr_45447 Neighboring gene STARR-seq mESC enhancer starr_45448 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:7140992-7141179 Neighboring gene mono-ADP ribosylhydrolase 1 Neighboring gene RIKEN cDNA 5730409K12 gene Neighboring gene fibronectin leucine rich transmembrane protein 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:7190709-7190892 Neighboring gene predicted gene, 38621

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables Hsp70 protein binding ISO
Inferred from Sequence Orthology
more info
 
enables Hsp90 protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables Hsp90 protein binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein-folding chaperone binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to interleukin-7 IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in myelin sheath HDA PubMed 
is_active_in nucleus IPI
Inferred from Physical Interaction
more info
PubMed 
part_of protein folding chaperone complex ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
stress-induced-phosphoprotein 1
Names
Hsp70/Hsp90 organizing protein
IEF SSP 3521
hsc70/Hsp90-organizing protein
mSTI1
stress-inducible protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016737.2NP_058017.1  stress-induced-phosphoprotein 1

    See identical proteins and their annotated locations for NP_058017.1

    Status: VALIDATED

    Source sequence(s)
    AK167273, BY387498, CJ155828
    Consensus CDS
    CCDS37901.1
    UniProtKB/Swiss-Prot
    Q3TT16, Q60864, Q8BPH3, Q99L66
    UniProtKB/TrEMBL
    Q3THQ5
    Related
    ENSMUSP00000025918.8, ENSMUST00000025918.9
    Conserved Domains (6) summary
    smart00727
    Location:492531
    STI1; Heat shock chaperonin-binding motif
    smart00028
    Location:300328
    TPR; Tetratricopeptide repeats
    sd00006
    Location:364388
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:394427
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:360425
    TPR_11; TPR repeat
    pfam13424
    Location:255328
    TPR_12; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    6998064..7017394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)