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Fam228b family with sequence similarity 228, member B [ Mus musculus (house mouse) ]

Gene ID: 207921, updated on 5-Mar-2024

Summary

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Official Symbol
Fam228bprovided by MGI
Official Full Name
family with sequence similarity 228, member Bprovided by MGI
Primary source
MGI:MGI:2442121
See related
Ensembl:ENSMUSG00000050545 AllianceGenome:MGI:2442121
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A830093I24Rik
Summary
Orthologous to human FAM228B (family with sequence similarity 228 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 3.8), frontal lobe adult (RPKM 1.5) and 15 other tissues See more
Orthologs
human all
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Genomic context

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See Fam228b in Genome Data Viewer
Location:
12 A1.1; 12 2.09 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (4789888..4819259, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (4739888..4769267, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene intersectin 2 Neighboring gene predicted gene, 53750 Neighboring gene family with sequence similarity 228, member A Neighboring gene predicted gene, 23676 Neighboring gene predicted gene, 22003 Neighboring gene profilin family, member 4 Neighboring gene tubulin, alpha 1C pseudogene Neighboring gene quinone oxidoreductase PIG3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
protein FAM228B
Names
UPF0638 protein B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001382825.1 → NP_001369754.1  protein FAM228B isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    CT025683

  2. NM_001382826.1 → NP_001369755.1  protein FAM228B isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), as well as variant 3, encodes isoform b.
    Source sequence(s)
    CT025683
    UniProtKB/Swiss-Prot
    Q497Q6, Q8BLM3, Q8BWN5

  3. NM_001382827.1 → NP_001369756.1  protein FAM228B isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), as well as variant 5, encodes isoform c.
    Source sequence(s)
    CT025683
    UniProtKB/TrEMBL
    A0A1W2P7H1

  4. NM_001382828.1 → NP_001369757.1  protein FAM228B isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), as well as variant 4, encodes isoform c.
    Source sequence(s)
    CT025683
    UniProtKB/TrEMBL
    A0A1W2P7H1
    Related
    ENSMUSP00000151649.2, ENSMUST00000218199.2

  5. NM_001382829.1 → NP_001369758.1  protein FAM228B isoform d

    Status: VALIDATED

    Source sequence(s)
    CT025683

  6. NM_001382830.1 → NP_001369759.1  protein FAM228B isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variant 8, encodes isoform e.
    Source sequence(s)
    CT025683

  7. NM_001382831.1 → NP_001369760.1  protein FAM228B isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variant 7, encodes isoform e.
    Source sequence(s)
    CT025683

  8. NM_001382832.1 → NP_001369761.1  protein FAM228B isoform f

    Status: VALIDATED

    Source sequence(s)
    CT025683

  9. NM_175431.5 → NP_780640.2  protein FAM228B isoform b

    See identical proteins and their annotated locations for NP_780640.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3), as well as variant 2, encodes isoform b.
    Source sequence(s)
    CT025683
    Consensus CDS
    CCDS36400.1
    UniProtKB/Swiss-Prot
    Q497Q6, Q8BLM3, Q8BWN5
    Related
    ENSMUSP00000050881.6, ENSMUST00000053458.7

RNA

  1. NR_168577.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CT025683

  2. NR_168578.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CT025683

  3. NR_168579.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CT025683

  4. NR_168580.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CT025683

  5. NR_168581.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CT025683

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    4789888..4819259 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515030.2 → XP_006515093.1  protein FAM228B isoform X1

    See identical proteins and their annotated locations for XP_006515093.1

  2. XM_036157291.1 → XP_036013184.1  protein FAM228B isoform X3

  3. XM_036157290.1 → XP_036013183.1  protein FAM228B isoform X2

  4. XM_036157292.1 → XP_036013185.1  protein FAM228B isoform X3

  5. XM_036157289.1 → XP_036013182.1  protein FAM228B isoform X2

  6. XM_030246633.2 → XP_030102493.1  protein FAM228B isoform X5

  7. XM_030246631.2 → XP_030102491.1  protein FAM228B isoform X1

  8. XM_030246634.2 → XP_030102494.1  protein FAM228B isoform X7

  9. XM_036157294.1 → XP_036013187.1  protein FAM228B isoform X6

    Related
    ENSMUSP00000151270.2, ENSMUST00000218575.2

  10. XM_036157293.1 → XP_036013186.1  protein FAM228B isoform X4

RNA

  1. XR_004937472.1 RNA Sequence

  2. XR_004937475.1 RNA Sequence

  3. XR_004937477.1 RNA Sequence

  4. XR_004937478.1 RNA Sequence

  5. XR_004937476.1 RNA Sequence

  6. XR_004937473.1 RNA Sequence

  7. XR_003950021.2 RNA Sequence

  8. XR_004937471.1 RNA Sequence

  9. XR_004937470.1 RNA Sequence

  10. XR_004937474.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q497Q6.1 GenPept UniProtKB/Swiss-Prot:Q497Q6

Gene LinkOut

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