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NIBAN3 niban apoptosis regulator 3 [ Homo sapiens (human) ]

Gene ID: 199786, updated on 3-Apr-2024

Summary

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Official Symbol
NIBAN3provided by HGNC
Official Full Name
niban apoptosis regulator 3provided by HGNC
Primary source
HGNC:HGNC:24130
See related
Ensembl:ENSG00000167483 MIM:609967; AllianceGenome:HGNC:24130
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BCNP1; FAM129C
Expression
Biased expression in spleen (RPKM 12.1), lymph node (RPKM 9.4) and 2 other tissues See more
Orthologs
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Genomic context

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See NIBAN3 in Genome Data Viewer
Location:
19p13.11
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (17523301..17555537)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (17657937..17690155)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (17634110..17664652)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14274 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10347 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:17581949-17582450 Neighboring gene Sharpr-MPRA regulatory region 2801 Neighboring gene solute carrier family 27 member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:17593839-17594340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14275 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:17599959-17600122 Neighboring gene PGLS divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:17609403-17609947 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:17610300-17611168 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:17611169-17612037 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr19:17618299-17619498 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:17621304-17621961 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:17621962-17622618 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10350 Neighboring gene Sharpr-MPRA regulatory region 7913 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:17623276-17623931 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14278 Neighboring gene 6-phosphogluconolactonase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10351 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:17641583-17642201 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10352 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10353 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10354 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10355 Neighboring gene collagen beta(1-O)galactosyltransferase 1 Neighboring gene Sharpr-MPRA regulatory region 8704 Neighboring gene ribosomal protein L21 pseudogene 130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The possible roles of B-cell novel protein-1 (BCNP1) in cellular signalling pathways and in cancer. Patel SJ, et al. J Cell Mol Med, 2017 Mar. PMID 27680505, Free PMC Article
  2. Proteomic analysis of the cell-surface membrane in chronic lymphocytic leukemia: identification of two novel proteins, BCNP1 and MIG2B. Boyd RS, et al. Leukemia, 2003 Aug. PMID 12886250
  3. Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei. Fasci D, et al. Mol Cell Proteomics, 2018 Oct. PMID 30021884, Free PMC Article
  4. A reference map of the human binary protein interactome. Luck K, et al. Nature, 2020 Apr. PMID 32296183, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PI3K inhibition and p38 MAPK activation leads to reduction in phosphorylation of BCNP1 at serine residues.
    Title: The possible roles of B-cell novel protein-1 (BCNP1) in cellular signalling pathways and in cancer.
  2. Isolation and sequencing. Prediction of transmembrane domains, with three alternatively spliced final exons.
    Title: Proteomic analysis of the cell-surface membrane in chronic lymphocytic leukemia: identification of two novel proteins, BCNP1 and MIG2B.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ39802

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
protein Niban 3
Names
B-cell novel protein 1
family with sequence similarity 129 member C
niban-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098524.2 → NP_001091994.2  protein Niban 3 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS42521.1
    UniProtKB/TrEMBL
    Q8N894
    Related
    ENSP00000333447.4, ENST00000332386.9

  2. NM_001321826.2 → NP_001308755.2  protein Niban 3 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS82315.1
    UniProtKB/TrEMBL
    B4DT44, M0R0E0
    Related
    ENSP00000471168.1, ENST00000601861.5

  3. NM_001321827.2 → NP_001308756.2  protein Niban 3 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS82314.1
    UniProtKB/TrEMBL
    M0QXK3, Q8N894
    Related
    ENSP00000469225.1, ENST00000599164.6

  4. NM_001321828.1 → NP_001308757.1  protein Niban 3 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC010618, AI688885, AK298062, AY254198
    Consensus CDS
    CCDS82317.1
    UniProtKB/Swiss-Prot
    Q86XR2
    Related
    ENSP00000394929.2, ENST00000449408.6

  5. NM_001363609.1 → NP_001350538.1  protein Niban 3 isoform f

    Status: VALIDATED

    Source sequence(s)
    AC010618, AK097121, AY254198
    Consensus CDS
    CCDS86723.1
    UniProtKB/TrEMBL
    M0QZV9, Q8N894
    Related
    ENSP00000470798.1, ENST00000599124.1

  6. NM_173544.5 → NP_775815.3  protein Niban 3 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC010618
    Consensus CDS
    CCDS12362.1
    UniProtKB/Swiss-Prot
    B4DNU3, B4DVN7, Q7Z6H6, Q86XR2, Q86XR3, Q86XR4, Q8TEQ3
    UniProtKB/TrEMBL
    B4DT44
    Related
    ENSP00000335040.3, ENST00000335393.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    17523301..17555537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011527786.3 → XP_011526088.1  protein Niban 3 isoform X5

    UniProtKB/TrEMBL
    Q8N894

  2. XM_017026453.2 → XP_016881942.1  protein Niban 3 isoform X1

    UniProtKB/TrEMBL
    B4DT44

  3. XM_017026454.2 → XP_016881943.1  protein Niban 3 isoform X2

  4. XM_047438389.1 → XP_047294345.1  protein Niban 3 isoform X8

  5. XM_011527781.4 → XP_011526083.1  protein Niban 3 isoform X3

    UniProtKB/TrEMBL
    Q8N894

  6. XM_011527787.4 → XP_011526089.1  protein Niban 3 isoform X6

    UniProtKB/TrEMBL
    M0QX95
    Related
    ENSP00000468994.1, ENST00000600519.5

  7. XM_047438390.1 → XP_047294346.1  protein Niban 3 isoform X9

  8. XM_011527789.2 → XP_011526091.1  protein Niban 3 isoform X7

    UniProtKB/TrEMBL
    M0QX95

  9. XM_017026457.2 → XP_016881946.1  protein Niban 3 isoform X8

  10. XM_047438388.1 → XP_047294344.1  protein Niban 3 isoform X4

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    17657937..17690155
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054320168.1 → XP_054176143.1  protein Niban 3 isoform X5

  2. XM_054320164.1 → XP_054176139.1  protein Niban 3 isoform X1

  3. XM_054320165.1 → XP_054176140.1  protein Niban 3 isoform X2

  4. XM_054320171.1 → XP_054176146.1  protein Niban 3 isoform X8

  5. XM_054320166.1 → XP_054176141.1  protein Niban 3 isoform X3

  6. XM_054320169.1 → XP_054176144.1  protein Niban 3 isoform X6

  7. XM_054320173.1 → XP_054176148.1  protein Niban 3 isoform X9

  8. XM_054320170.1 → XP_054176145.1  protein Niban 3 isoform X7

  9. XM_054320172.1 → XP_054176147.1  protein Niban 3 isoform X8

  10. XM_054320167.1 → XP_054176142.1  protein Niban 3 isoform X4

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q86XR2.2 GenPept UniProtKB/Swiss-Prot:Q86XR2

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