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Rny1 RNA, Y1 small cytoplasmic, Ro-associated [ Mus musculus (house mouse) ]

Gene ID: 19872, updated on 11-Apr-2024

Summary

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Official Symbol
Rny1provided by MGI
Official Full Name
RNA, Y1 small cytoplasmic, Ro-associatedprovided by MGI
Primary source
MGI:MGI:97995
See related
Ensembl:ENSMUSG00000065701 AllianceGenome:MGI:97995
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to act upstream of or within DNA replication initiation and nuclear DNA replication. Predicted to be located in nucleus. Orthologous to human RNY1 (RNA, Ro60-associated Y1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
6 B2.3; 6 22.94 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (47765004..47765114, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (47788070..47788180, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2783 Neighboring gene RNA, Y3 small cytoplasmic (associated with Ro protein) Neighboring gene STARR-positive B cell enhancer ABC_E438 Neighboring gene ribosomal protein L31, pseudogene 7 Neighboring gene protein disulfide isomerase associated 4 Neighboring gene microRNA 704 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:47763598-47763839 Neighboring gene ribosomal protein L35A, pseudogene 7 Neighboring gene zinc finger protein 786

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Y RNA functions at the initiation step of mammalian chromosomal DNA replication. Krude T, et al. J Cell Sci, 2009 Aug 15. PMID 19657016
  2. The molecular cloning of a mouse Ro RNA, my1-like sequence. Crouch D, et al. Nucleic Acids Res, 1989 Jun 26. PMID 2473445, Free PMC Article
  3. Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6. Farris AD, et al. Gene, 1996 Sep 26. PMID 8863726
  4. The gene for death agonist BID maps to the region of human 22q11.2 duplicated in cat eye syndrome chromosomes and to mouse chromosome 6. Footz TK, et al. Genomics, 1998 Aug 1. PMID 9721221

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication initiation ISO
Inferred from Sequence Orthology
more info
 PubMed 
acts_upstream_of_or_within nuclear DNA replication ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004419.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    U34828
    Related
    ENSMUST00000083767.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    47765004..47765114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases