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Snord3a small nucleolar RNA, C/D box 3A [ Mus musculus (house mouse) ]

Gene ID: 19850, updated on 8-Feb-2024

Summary

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Official Symbol
Snord3aprovided by MGI
Official Full Name
small nucleolar RNA, C/D box 3Aprovided by MGI
Primary source
MGI:MGI:97977
See related
Ensembl:ENSMUSG00000106147 AllianceGenome:MGI:97977
Gene type
snRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rnu3a
Summary
Acts upstream of or within response to bacterium. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
10 B1; 10 21.81 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (40134464..40134675)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (40258468..40258679)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:39952398-39952599 Neighboring gene ribosome production factor 2 homolog Neighboring gene STARR-positive B cell enhancer ABC_E10600 Neighboring gene STARR-seq mESC enhancer starr_26413 Neighboring gene general transcription factor IIIC, polypeptide 6, alpha Neighboring gene S-adenosylmethionine decarboxylase 1 Neighboring gene STARR-positive B cell enhancer ABC_E2319 Neighboring gene STARR-seq mESC enhancer starr_26414 Neighboring gene predicted gene 8948

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Presence of a differentially expressed U3A RNA variant in mouse. Structure and evolutive implications. Mazan S, et al. FEBS Lett, 1990 Jul 2. PMID 2365077
  2. Structure of the differentially expressed mouse U3A gene. Mazan S, et al. Eur J Biochem, 1992 May 1. PMID 1576989
  3. In humans all U3 genes map to chromosome 17p12-->p11, but in mouse the U3A and U3B genes are located on different chromosomes. Mazan S, et al. Cytogenet Cell Genet, 1993. PMID 8440138
  4. Small nucleolar RNAs. Eliceiri GL. Cell Mol Life Sci, 1999 Oct 1. PMID 11213258
  5. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Other Names

  • U3A small nuclear RNA

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002842.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131684
    Related
    ENSMUST00000196710.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    40134464..40134675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases