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MGC15885 uncharacterized protein MGC15885 [ Homo sapiens (human) ]

Gene ID: 197003, updated on 10-Oct-2023

Summary

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Gene symbol
MGC15885
Gene description
uncharacterized protein MGC15885
See related
Ensembl:ENSG00000259458
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See MGC15885 in Genome Data Viewer
Location:
15q22.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (62637172..62645181, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (60440786..60448778, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (62929371..62937380, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903503 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 26 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9522 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:62682405-62682601 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6506 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:62683157-62683771 Neighboring gene Sharpr-MPRA regulatory region 2524 Neighboring gene talin 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62743573-62744182 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:62744183-62744792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:62746267-62746815 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:62756849-62757380 Neighboring gene Sharpr-MPRA regulatory region 10240 Neighboring gene Sharpr-MPRA regulatory region 9025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9523 Neighboring gene uncharacterized LOC105370855 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:62982679-62983533 Neighboring gene Sharpr-MPRA regulatory region 9569 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:63000369-63001140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:63014118-63014618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:63014619-63015119 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:63035758-63035913 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr15:63050295-63051092 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:63051093-63051890 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:63062481-63062994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:63074305-63075233 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:63088457-63088957 Neighboring gene microRNA 190a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. ZFP36L2 is a cell cycle-regulated CCCH protein necessary for DNA lesion-induced S-phase arrest. Noguchi A, et al. Biol Open, 2018 Mar 12. PMID 29449217, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026897.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC100839, BC014404, BC131619
    Related
    ENST00000558940.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    62637172..62645181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    60440786..60448778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152648.1: Suppressed sequence

    Description
    NM_152648.1: This RefSeq was permanently suppressed because currently insufficient support exists for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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