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Msantd5l Myb/SANT DNA binding domain containing 5 like [ Mus musculus (house mouse) ]

Gene ID: 193286, updated on 8-Feb-2024

Summary

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Official Symbol
Msantd5lprovided by MGI
Official Full Name
Myb/SANT DNA binding domain containing 5 likeprovided by MGI
Primary source
MGI:MGI:3039622
See related
Ensembl:ENSMUSG00000045942 AllianceGenome:MGI:3039622
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930503F14
Expression
Restricted expression toward testis adult (RPKM 110.8) See more
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Genomic context

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Location:
11 B1.3; 11 31.02 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (51144472..51154489, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (51253645..51263662, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene pluripotency associated transcript 20 Neighboring gene Myb/SANT DNA binding domain containing 5 Neighboring gene STARR-positive B cell enhancer ABC_E5223 Neighboring gene CDC like kinase 4 Neighboring gene collagen, type XXIII, alpha 1 Neighboring gene STARR-positive B cell enhancer mm9_chr11:51347850-51348150 Neighboring gene STARR-positive B cell enhancer ABC_E6980 Neighboring gene STARR-seq mESC enhancer starr_29416 Neighboring gene STARR-positive B cell enhancer ABC_E3947 Neighboring gene 5-phosphohydroxy-L-lysine phospholyase Neighboring gene heterogeneous nuclear ribonucleoprotein A/B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC193286

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358279.1 → NP_001345208.1  uncharacterized protein LOC193286 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL645907
    Consensus CDS
    CCDS24650.1
    UniProtKB/TrEMBL
    Q8C601

  2. NM_001358280.1 → NP_001345209.1  uncharacterized protein LOC193286 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL645907, AW456486, BC049762
    Consensus CDS
    CCDS24650.1
    UniProtKB/TrEMBL
    Q8C601
    Related
    ENSMUSP00000061848.3, ENSMUST00000054226.3

  3. NM_001358281.1 → NP_001345210.1  uncharacterized protein LOC193286 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK076829, AW456486, BX516206
    UniProtKB/TrEMBL
    A0A338P6D5

  4. NM_001358282.1 → NP_001345211.1  uncharacterized protein LOC193286 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL645907
    Consensus CDS
    CCDS24650.1
    UniProtKB/TrEMBL
    Q8C601

  5. NM_001382322.1 → NP_001369251.1  uncharacterized protein LOC193286 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL645907
    UniProtKB/TrEMBL
    A0A338P6D5

  6. NM_177567.4 → NP_808235.1  uncharacterized protein LOC193286 isoform 1

    See identical proteins and their annotated locations for NP_808235.1

    Status: VALIDATED

    Source sequence(s)
    AK076829, AL645907, AW456486
    Consensus CDS
    CCDS24650.1
    UniProtKB/TrEMBL
    Q8C601
    Related
    ENSMUSP00000071085.4, ENSMUST00000065950.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    51144472..51154489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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