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Rspo1 R-spondin 1 [ Mus musculus (house mouse) ]

Gene ID: 192199, updated on 21-Apr-2024

Summary

Official Symbol
Rspo1provided by MGI
Official Full Name
R-spondin 1provided by MGI
Primary source
MGI:MGI:2183426
See related
Ensembl:ENSMUSG00000028871 AllianceGenome:MGI:2183426
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rspondin; R-spondin
Summary
Enables heparin binding activity and signaling receptor binding activity. Involved in positive regulation of canonical Wnt signaling pathway. Acts upstream of or within several processes, including male meiotic nuclear division; positive regulation of non-canonical Wnt signaling pathway; and regulation of male germ cell proliferation. Located in extracellular space and nucleus. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and skeleton. Orthologous to human RSPO1 (R-spondin 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in ovary adult (RPKM 13.8), CNS E11.5 (RPKM 10.5) and 19 other tissues See more
Orthologs
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Genomic context

Location:
4 D2.2; 4 57.96 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (124880197..124902895)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (124986401..125009102)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E424 Neighboring gene STARR-positive B cell enhancer ABC_E4665 Neighboring gene AFG2 interacting ribosome maturation factor Neighboring gene predicted gene 12930 Neighboring gene predicted gene, 32371 Neighboring gene predicted gene, 38472 Neighboring gene STARR-positive B cell enhancer ABC_E7987 Neighboring gene guanine nucleotide binding protein nucleolar 2 Neighboring gene dynein, axonemal, light intermediate polypeptide 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (6)  1 citation
  • Endonuclease-mediated (3) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables heparin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables signaling receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables signaling receptor binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
R-spondin-1
Names
R-spondin homolog
cristin-3
cysteine-rich and single thrombospondin domain-containing protein 3
mCristin-3
roof plate-specific spondin-1
thrombospondin type 1 domain containing gene Rspondin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138683.2NP_619624.2  R-spondin-1 precursor

    See identical proteins and their annotated locations for NP_619624.2

    Status: VALIDATED

    Source sequence(s)
    AB016768, AK132277
    Consensus CDS
    CCDS18633.1
    UniProtKB/Swiss-Prot
    Q3V1S3, Q9Z132
    UniProtKB/TrEMBL
    B1ASC1
    Related
    ENSMUSP00000030687.8, ENSMUST00000030687.8
    Conserved Domains (3) summary
    cd00064
    Location:100142
    FU; Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
    pfam15913
    Location:42144
    Furin-like_2; Furin-like repeat, cysteine-rich
    cl15278
    Location:151208
    TSP_1; Thrombospondin type 1 domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    124880197..124902895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006502862.4XP_006502925.1  R-spondin-1 isoform X1

    Conserved Domains (2) summary
    PTZ00441
    Location:89143
    PTZ00441; sporozoite surface protein 2 (SSP2); Provisional
    pfam15913
    Location:1978
    Furin-like_2; Furin-like repeat, cysteine-rich