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Phxr4 per-hexamer repeat gene 4 [ Mus musculus (house mouse) ]

Gene ID: 18689, updated on 8-Feb-2024

Summary

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Official Symbol
Phxr4provided by MGI
Official Full Name
per-hexamer repeat gene 4provided by MGI
Primary source
MGI:MGI:104522
See related
Ensembl:ENSMUSG00000031802 AllianceGenome:MGI:104522
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sp5
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Genomic context

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Location:
9 A1; 9 3.13 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (13342657..13344047)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (13431361..13432751)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 82 Neighboring gene Jrk-like Neighboring gene predicted gene, 26189 Neighboring gene mastermind like transcriptional coactivator 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:13269708-13269915 Neighboring gene STARR-seq mESC enhancer starr_23332 Neighboring gene STARR-seq mESC enhancer starr_23333 Neighboring gene STARR-seq mESC enhancer starr_23334 Neighboring gene STARR-seq mESC enhancer starr_23335 Neighboring gene predicted gene, 51666 Neighboring gene VISTA enhancer mm1371 Neighboring gene predicted gene, 39291 Neighboring gene myotubularin related protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mouse spleen derived cDNA clones containing per repeat sequence. Nishimatsu S, et al. Nucleic Acids Res, 1988 Dec 23. PMID 3267239, Free PMC Article
  2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Clone Names

  • MGC130239, MGC130240

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028271.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC241616
    Related
    ENSMUST00000216590.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    13342657..13344047
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_008835.1: Suppressed sequence

    Description
    NM_008835.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P15974.1 GenPept UniProtKB/Swiss-Prot:P15974

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.