U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cfp complement factor properdin [ Mus musculus (house mouse) ]

Gene ID: 18636, updated on 21-Apr-2024

Summary

Official Symbol
Cfpprovided by MGI
Official Full Name
complement factor properdinprovided by MGI
Primary source
MGI:MGI:97545
See related
Ensembl:ENSMUSG00000001128 AllianceGenome:MGI:97545
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pfc; BCFG
Summary
Involved in complement activation, alternative pathway. Located in extracellular space and secretory granule. Is expressed in embryo; liver left lobe; and liver right lobe. Human ortholog(s) of this gene implicated in X-linked properdin deficiency. Orthologous to human CFP (complement factor properdin). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in spleen adult (RPKM 86.6), mammary gland adult (RPKM 42.7) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
X A1.3; X 16.44 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (20791693..20797794, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (20925454..20931555, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene microRNA 5617 Neighboring gene synapsin I Neighboring gene tissue inhibitor of metalloproteinase 1 Neighboring gene STARR-seq mESC enhancer starr_46887 Neighboring gene STARR-seq mESC enhancer starr_46888 Neighboring gene ELK1, member of ETS oncogene family Neighboring gene RIKEN cDNA A230072C01 gene Neighboring gene ubiquitously expressed prefoldin like chaperone

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (4)  1 citation
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
properdin
Names
complement factor P
properdin factor, complement

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008823.4NP_032849.2  properdin precursor

    See identical proteins and their annotated locations for NP_032849.2

    Status: VALIDATED

    Source sequence(s)
    AK159291, AL671853, BY347370
    Consensus CDS
    CCDS30047.1
    UniProtKB/Swiss-Prot
    P11680, Q3TB98, Q3U779
    UniProtKB/TrEMBL
    A2AE15
    Related
    ENSMUSP00000001156.8, ENSMUST00000001156.8
    Conserved Domains (2) summary
    smart00209
    Location:192251
    TSP1; Thrombospondin type 1 repeats
    pfam00090
    Location:136184
    TSP_1; Thrombospondin type 1 domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    20791693..20797794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)