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F53A9.6 Spore coat protein [ Caenorhabditis elegans ]

Gene ID: 186145, updated on 23-Nov-2023

Summary

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Gene symbol
F53A9.6
Gene description
Spore coat protein
Primary source
WormBase:WBGene00018729
Locus tag
CELE_F53A9.6
See related
AllianceGenome:WB:WBGene00018729
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in innate immune response. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: X
Exon count:
1
Sequence:
Chromosome: X; NC_003284.9 (8713544..8713804, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Protein kreg-1 Neighboring gene Spore coat protein Neighboring gene Threonine dehydratase Neighboring gene Zinc transporter Slc39a7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A conserved role for a GATA transcription factor in regulating epithelial innate immune responses. Shapira M, et al. Proc Natl Acad Sci U S A, 2006 Sep 19. PMID 16968778, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in innate immune response HEP PubMed 
involved_in response to stress IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in stress response to metal ion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Spore coat protein
NP_509475.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    8713544..8713804 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_077074.7 → NP_509475.1  Spore coat protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509475.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20691
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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