Ddr2 discoidin domain receptor family, member 2 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Ddr2provided by MGI
Official Full Name: discoidin domain receptor family, member 2provided by MGI
Primary source: MGI:MGI:1345277
See related: Ensembl:ENSMUSG00000026674 AllianceGenome:MGI:1345277
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Ntrkr3; tyro10
Summary: Enables collagen binding activity and protein tyrosine kinase collagen receptor activity. Involved in several processes, including chondrocyte proliferation; collagen fibril organization; and collagen-activated tyrosine kinase receptor signaling pathway. Acts upstream of or within positive regulation of cell population proliferation; protein autophosphorylation; and transmembrane receptor protein tyrosine kinase signaling pathway. Predicted to be located in actin cytoskeleton and apical plasma membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in alimentary system; central nervous system; genitourinary system; and retina. Human ortholog(s) of this gene implicated in gastrointestinal system cancer (multiple); osteoarthritis; and spondylometaepiphyseal dysplasia, short limb-hand type. Orthologous to human DDR2 (discoidin domain receptor tyrosine kinase 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in bladder adult (RPKM 28.6), limb E14.5 (RPKM 18.7) and 13 other tissues See more
Orthologs: human all
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Genomic context

Location:: 1 H3; 1 76.84 cM

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	1	NC_000067.7 (169799874..169938525, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	1	NC_000067.6 (169972307..170110836, complement)

Chromosome 1 - NC_000067.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Discoidin domain receptor 2 signaling through PIK3C2alpha in fibroblasts promotes lung fibrosis.
Title: Discoidin domain receptor 2 signaling through PIK3C2α in fibroblasts promotes lung fibrosis.
DDR2-regulated arginase activity in ovarian cancer-associated fibroblasts promotes collagen production and tumor progression.
Title: DDR2-regulated arginase activity in ovarian cancer-associated fibroblasts promotes collagen production and tumor progression.
[Application of precision-cut lung slice technology to study the role of DDR2 in pulmonary fibrosis].
Title: [Application of precision-cut lung slice technology to study the role of DDR2 in pulmonary fibrosis].
Control of craniofacial development by the collagen receptor, discoidin domain receptor 2.
Title: Control of craniofacial development by the collagen receptor, discoidin domain receptor 2.
Ablation of myeloid discoidin domain receptor 2 exacerbates arthritis and high fat diet induced inflammation.
Title: Ablation of myeloid discoidin domain receptor 2 exacerbates arthritis and high fat diet induced inflammation.
Discoidin domain receptor 2 regulates aberrant mesenchymal lineage cell fate and matrix organization.
Title: Discoidin domain receptor 2 regulates aberrant mesenchymal lineage cell fate and matrix organization.
Adipose-derived stem cells-derived exosomes facilitate cutaneous wound healing by delivering XIST and restoring discoidin domain receptor 2.
Title: Adipose-derived stem cells-derived exosomes facilitate cutaneous wound healing by delivering XIST and restoring discoidin domain receptor 2.
Targeting adipocytic discoidin domain receptor 2 impedes fat gain while increasing bone mass.
Title: Targeting adipocytic discoidin domain receptor 2 impedes fat gain while increasing bone mass.
Role of Discoidin Domain Receptor 2 in Craniofacial Bone Regeneration.
Title: Role of Discoidin Domain Receptor 2 in Craniofacial Bone Regeneration.
The role of discoidin domain receptor 2 in the renal dysfunction of alport syndrome mouse model.
Title: The role of discoidin domain receptor 2 in the renal dysfunction of alport syndrome mouse model.

Submit: New GeneRIF Correction See all GeneRIFs (44)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Spontaneous (1) 1 citation
Targeted (7) 1 citation
Chemically induced (ENU) (1)
Endonuclease-mediated (4)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

NoName (e-PCR)
- UniSTS:234264

RH130509 (e-PCR)
- UniSTS:213793

AI838577 (e-PCR)
- UniSTS:164140

AW495251 (e-PCR)
- UniSTS:178505

BE116270 (e-PCR)
- UniSTS:248458

G49238 (e-PCR)
- UniSTS:108994

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info
enables collagen binding	IBA Inferred from Biological aspect of Ancestor more info
enables collagen binding	IDA Inferred from Direct Assay more info	PubMed
enables collagen binding	ISO Inferred from Sequence Orthology more info
enables kinase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info
enables protein kinase activity	IEA Inferred from Electronic Annotation more info
enables protein tyrosine kinase activity	IEA Inferred from Electronic Annotation more info
enables protein tyrosine kinase collagen receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables protein tyrosine kinase collagen receptor activity	IDA Inferred from Direct Assay more info	PubMed
enables protein tyrosine kinase collagen receptor activity	ISO Inferred from Sequence Orthology more info
enables transferase activity	IEA Inferred from Electronic Annotation more info
enables transmembrane receptor protein tyrosine kinase activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in biomineral tissue development	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in cell surface receptor protein tyrosine kinase signaling pathway	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within cell surface receptor protein tyrosine kinase signaling pathway	IDA Inferred from Direct Assay more info	PubMed
involved_in chondrocyte proliferation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in collagen fibril organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in collagen-activated tyrosine kinase receptor signaling pathway	IDA Inferred from Direct Assay more info	PubMed
involved_in collagen-activated tyrosine kinase receptor signaling pathway	ISO Inferred from Sequence Orthology more info
involved_in endochondral bone growth	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in multicellular organism development	IBA Inferred from Biological aspect of Ancestor more info
involved_in negative regulation of apoptotic process	ISO Inferred from Sequence Orthology more info
involved_in negative regulation of hydrogen peroxide-mediated programmed cell death	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within ossification	IEA Inferred from Electronic Annotation more info
involved_in peptidyl-tyrosine phosphorylation	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within phosphorylation	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of DNA-binding transcription factor activity	ISO Inferred from Sequence Orthology more info
NOT involved_in positive regulation of ERK1 and ERK2 cascade	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of G1/S transition of mitotic cell cycle	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within positive regulation of cell population proliferation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of collagen biosynthetic process	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of extracellular matrix disassembly	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of fibroblast migration	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of fibroblast proliferation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of hepatic stellate cell activation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of hepatic stellate cell proliferation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of kinase activity	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of neuron projection development	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of osteoblast differentiation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of protein kinase activity	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of vascular associated smooth muscle cell migration	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of vascular associated smooth muscle cell proliferation	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of wound healing	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within protein autophosphorylation	IDA Inferred from Direct Assay more info	PubMed
involved_in protein autophosphorylation	ISO Inferred from Sequence Orthology more info
involved_in protein phosphorylation	IEA Inferred from Electronic Annotation more info
involved_in regulation of bone mineralization	ISO Inferred from Sequence Orthology more info
involved_in regulation of tissue remodeling	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in actin cytoskeleton	ISO Inferred from Sequence Orthology more info
located_in apical plasma membrane	ISO Inferred from Sequence Orthology more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info
part_of receptor complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: discoidin domain-containing receptor 2

Names: CD167 antigen-like family member B; discoidin domain receptor 2; neurotrophic tyrosine kinase, receptor-related 3; receptor protein-tyrosine kinase TKT; tyrosine-protein kinase TYRO10

NP_072075.2

EC 2.7.10.1

XP_006496759.1

EC 2.7.10.1

XP_006496760.1

EC 2.7.10.1

XP_006496761.1

EC 2.7.10.1

XP_036018652.1

EC 2.7.10.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_022563.2 → NP_072075.2 discoidin domain-containing receptor 2 precursor

See identical proteins and their annotated locations for NP_072075.2

Status: VALIDATED

Source sequence(s)

AC139673, AI838577, X76505

Consensus CDS

CCDS48436.1

UniProtKB/Swiss-Prot

B2RSD7, Q62371

Related

ENSMUSP00000129624.2, ENSMUST00000170800.8

Conserved Domains (2) summary

cd00057
Location:32 → 184

FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

cl21453
Location:557 → 850

PKc_like; Protein Kinases, catalytic domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000067.7 Reference GRCm39 C57BL/6J

Range

169799874..169938525 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_036162759.1 → XP_036018652.1 discoidin domain-containing receptor 2 isoform X1

Conserved Domains (2) summary

cd00057
Location:42 → 194

FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

cl21453
Location:567 → 860

PKc_like; Protein Kinases, catalytic domain
XM_006496696.5 → XP_006496759.1 discoidin domain-containing receptor 2 isoform X2

See identical proteins and their annotated locations for XP_006496759.1

UniProtKB/Swiss-Prot

B2RSD7, Q62371

Conserved Domains (2) summary

cd00057
Location:32 → 184

FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

cl21453
Location:557 → 850

PKc_like; Protein Kinases, catalytic domain
XM_006496698.4 → XP_006496761.1 discoidin domain-containing receptor 2 isoform X2

See identical proteins and their annotated locations for XP_006496761.1

UniProtKB/Swiss-Prot

B2RSD7, Q62371

Related

ENSMUSP00000027985.3, ENSMUST00000027985.8

Conserved Domains (2) summary

cd00057
Location:32 → 184

FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

cl21453
Location:557 → 850

PKc_like; Protein Kinases, catalytic domain
XM_006496697.5 → XP_006496760.1 discoidin domain-containing receptor 2 isoform X2

See identical proteins and their annotated locations for XP_006496760.1

UniProtKB/Swiss-Prot

B2RSD7, Q62371

Related

ENSMUSP00000141443.2, ENSMUST00000194690.6

Conserved Domains (2) summary

cd00057
Location:32 → 184

FA58C; Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.

cl21453
Location:557 → 850

PKc_like; Protein Kinases, catalytic domain