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Mgat1 mannoside acetylglucosaminyltransferase 1 [ Mus musculus (house mouse) ]

Gene ID: 17308, updated on 21-Apr-2024

Summary

Official Symbol
Mgat1provided by MGI
Official Full Name
mannoside acetylglucosaminyltransferase 1provided by MGI
Primary source
MGI:MGI:96973
See related
Ensembl:ENSMUSG00000020346 AllianceGenome:MGI:96973
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mgat-1
Summary
Enables acetylglucosaminyltransferase activity. Acts upstream of or within UDP-N-acetylglucosamine catabolic process and in utero embryonic development. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including decidua; early conceptus; embryo ectoderm; embryo endoderm; and retina outer nuclear layer. Orthologous to human MGAT1 (alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 29.2), spleen adult (RPKM 26.9) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 B1.2; 11 29.27 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (49135018..49153854)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (49244191..49263027)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 62 Neighboring gene predicted gene, 18583 Neighboring gene STARR-positive B cell enhancer ABC_E6976 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:49057557-49057744 Neighboring gene predicted gene, 51893 Neighboring gene STARR-positive B cell enhancer ABC_E195 Neighboring gene STARR-positive B cell enhancer ABC_E8994 Neighboring gene olfactory receptor family 2 subfamily Y member 1G Neighboring gene STARR-seq mESC enhancer starr_29373 Neighboring gene olfactory receptor family 2 subfamily Y member 1F

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (5)  1 citation
  • Endonuclease-mediated (2) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables acetylglucosaminyltransferase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity ISO
Inferred from Sequence Orthology
more info
 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables manganese ion binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables transferase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in Golgi membrane ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase
Names
GNT-I
N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase I
glcNAc-T I
NP_001103618.1
NP_001103619.1
NP_001103620.1
NP_034924.3
XP_006532461.1
XP_006532462.1
XP_006532463.1
XP_017169803.1
XP_030101489.1
XP_030101490.1
XP_036012268.1
XP_036012269.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110148.1NP_001103618.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    See identical proteins and their annotated locations for NP_001103618.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AI118268, AK040121, AL606829, BY088342
    Consensus CDS
    CCDS24602.1
    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Related
    ENSMUSP00000126303.2, ENSMUST00000167400.8
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  2. NM_001110149.1NP_001103619.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    See identical proteins and their annotated locations for NP_001103619.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. All variants encode the same isoform.
    Source sequence(s)
    AI118268, AK040121
    Consensus CDS
    CCDS24602.1
    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Related
    ENSMUSP00000104817.2, ENSMUST00000109194.2
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  3. NM_001110150.1NP_001103620.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    See identical proteins and their annotated locations for NP_001103620.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. All variants encode the same isoform.
    Source sequence(s)
    AI118268, AK004760
    Consensus CDS
    CCDS24602.1
    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Related
    ENSMUSP00000098851.5, ENSMUST00000101293.11
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  4. NM_010794.3NP_034924.3  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    See identical proteins and their annotated locations for NP_034924.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. All variants encode the same isoform.
    Source sequence(s)
    AI118268, AK040121, AL606829, BY088342
    Consensus CDS
    CCDS24602.1
    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Related
    ENSMUSP00000080484.7, ENSMUST00000081794.7
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    49135018..49153854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017314314.1XP_017169803.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  2. XM_030245629.1XP_030101489.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  3. XM_036156375.1XP_036012268.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  4. XM_006532398.5XP_006532461.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    See identical proteins and their annotated locations for XP_006532461.1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  5. XM_030245630.2XP_030101490.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  6. XM_006532400.5XP_006532463.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    See identical proteins and their annotated locations for XP_006532463.1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  7. XM_036156376.1XP_036012269.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
  8. XM_006532399.3XP_006532462.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase isoform X1

    See identical proteins and their annotated locations for XP_006532462.1

    UniProtKB/Swiss-Prot
    P27808
    UniProtKB/TrEMBL
    Q544F0, Q8CIC9
    Conserved Domains (1) summary
    cl11394
    Location:12446
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold