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C25A1.1 FAM192A/Fyv6 N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 172880, updated on 23-Nov-2023

Summary

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Gene symbol
C25A1.1
Gene description
FAM192A/Fyv6 N-terminal domain-containing protein
Primary source
WormBase:WBGene00007705
Locus tag
CELE_C25A1.1
See related
AllianceGenome:WB:WBGene00007705
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in nucleus. Orthologous to human PSME3IP1 (proteasome activator subunit 3 interacting protein 1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See C25A1.1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (10162375..10163578)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene TPX2 domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene mRNA cap guanine-N7 methyltransferase Neighboring gene Fork-head domain-containing protein Neighboring gene ncRNA Neighboring gene RRM domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
FAM192A/Fyv6 N-terminal domain-containing protein
NP_492675.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    10162375..10163578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060274.6 → NP_492675.1  FAM192A/Fyv6 N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492675.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O17594
    Conserved Domains (1) summary
    pfam10187
    Location:5 → 104
    Nefa_Nip30_N; N-terminal domain of NEFA-interacting nuclear protein NIP30
Nucleotide Protein
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