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col-7 Cuticle collagen 7 [ Caenorhabditis elegans ]

Gene ID: 172494, updated on 23-Nov-2023

Summary

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Gene symbol
col-7
Gene description
Cuticle collagen 7
Primary source
WormBase:WBGene00000596
Locus tag
CELE_C15A11.5
See related
AllianceGenome:WB:WBGene00000596
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Is expressed in seam cell. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003279.8 (7401132..7402761)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Suppressor of lurcher protein 1 Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Caenorhabditis elegans heterochronic gene pathway controls stage-specific transcription of collagen genes. Liu Z, et al. Development, 1995 Aug. PMID 7671811
  2. Domain organization and intron positions in Caenorhabditis elegans collagen genes: the 54-bp module hypothesis revisited. Fields C. J Mol Evol, 1988 Dec-1989 Feb. PMID 3148742
  3. Sequence comparisons of developmentally regulated collagen genes of Caenorhabditis elegans. Cox GN, et al. Gene, 1989. PMID 2753356
  4. Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes, and their deduced collagen products. Bird DM. Gene, 1992 Oct 21. PMID 1398138
  5. Molecular biology of the cuticle collagen gene families of Caenorhabditis elegans and Haemonchus contortus. Cox GN. Acta Trop, 1990 Jul. PMID 1978527

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cuticle collagen 7
NP_492090.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    7401132..7402761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059689.8 → NP_492090.1  Cuticle collagen 7 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492090.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P18832, Q93210
    Conserved Domains (2) summary
    pfam01391
    Location:100 → 157
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:5 → 57
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P18832.2

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