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Mc5r melanocortin 5 receptor [ Mus musculus (house mouse) ]

Gene ID: 17203, updated on 5-Mar-2024

Summary

Official Symbol
Mc5rprovided by MGI
Official Full Name
melanocortin 5 receptorprovided by MGI
Primary source
MGI:MGI:99420
See related
Ensembl:ENSMUSG00000007480 AllianceGenome:MGI:99420
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable hormone binding activity and melanocortin receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in skin. Orthologous to human MC5R (melanocortin 5 receptor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in bladder adult (RPKM 1.6), mammary gland adult (RPKM 1.2) and 17 other tissues See more
Orthologs
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Genomic context

See Mc5r in Genome Data Viewer
Location:
18 E2; 18 41.46 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (68469811..68475517)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (68336744..68342446)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 210, member A Neighboring gene microRNA 7219 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:68459940-68460049 Neighboring gene RNA (guanine-7-) methyltransferase Neighboring gene STARR-seq mESC enhancer starr_44927 Neighboring gene predicted gene, 54023 Neighboring gene predicted gene, 54024

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (3) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables hormone binding ISO
Inferred from Sequence Orthology
more info
 
enables melanocortin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables melanocortin receptor activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
melanocortin receptor 5
Names
MC5-R

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013596.3NP_038624.3  melanocortin receptor 5

    Status: VALIDATED

    Source sequence(s)
    AC111069
    UniProtKB/Swiss-Prot
    P41149
    UniProtKB/TrEMBL
    G3UWB6
    Related
    ENSMUSP00000130497.3, ENSMUST00000172148.5
    Conserved Domains (2) summary
    cd14964
    Location:3963
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:37306
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    68469811..68475517
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_385979.5 RNA Sequence