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CYP2T1P cytochrome P450 family 2 subfamily T member 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 171523, updated on 16-Jan-2024

Summary

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Official Symbol
CYP2T1Pprovided by HGNC
Official Full Name
cytochrome P450 family 2 subfamily T member 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:18852
See related
Ensembl:ENSG00000293405 AllianceGenome:HGNC:18852
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CYP2T2P
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Genomic context

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Location:
19q13.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (40808443..40811100, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (43629122..43631779, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (41314348..41317005, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10648 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14667 Neighboring gene MIA-RAB4B readthrough (NMD candidate) Neighboring gene RAB4B-EGLN2 readthrough (NMD candidate) Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:41285223-41285754 Neighboring gene RAB4B, member RAS oncogene family Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10649 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:41306857-41307531 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:41307710-41308450 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14668 Neighboring gene egl-9 family hypoxia inducible factor 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:41314255-41314754 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:41317625-41318515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14669 Neighboring gene cytochrome P450 family 2 subfamily F member 2, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:41332287-41332788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:41332789-41333288 Neighboring gene Sharpr-MPRA regulatory region 4763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:41354211-41354710 Neighboring gene cytochrome P450 family 2 subfamily A member 6 Neighboring gene CYP2A6 5' regulatory region

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Organization, structure and evolution of the CYP2 gene cluster on human chromosome 19. Hoffman SM, et al. Pharmacogenetics, 2001 Nov. PMID 11692077
  2. Organization and evolution of the Cyp2 gene cluster on mouse chromosome 7, and comparison with the syntenic human cluster. Wang H, et al. Environ Health Perspect, 2003 Nov. PMID 14630516, Free PMC Article
  3. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Zhang ZD, et al. Genome Biol, 2010. PMID 20210993, Free PMC Article
  4. Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. Nelson DR, et al. Pharmacogenetics, 2004 Jan. PMID 15128046
  5. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • cytochrome P450, family 2, subfamily F, polypeptide 1 pseudogene
  • cytochrome P450, family 2, subfamily T, polypeptide 1, pseudogene
  • cytochrome P450, family 2, subfamily T, polypeptide 2, pseudogene
  • cytochrome P450, subfamily IIT, polypeptide 2 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144551.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008537, BX281617, DA593489
    Related
    ENST00000641596.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    40808443..40811100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    43629122..43631779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_024182.1: Suppressed sequence

    Description
    NG_024182.1: This RefSeq was permanently suppressed because it was redundant with the annotation of geneID:171523 on NG_000008.7

  2. NG_027794.1: Suppressed sequence

    Description
    NG_027794.1: This RefSeq was permanently suppressed because it was redundant with the annotation of geneID:171523 on NG_000008.7
Nucleotide Protein
Heading Accession and Version

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