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Vmn1r212 vomeronasal 1 receptor 212 [ Mus musculus (house mouse) ]

Gene ID: 171275, updated on 8-Feb-2024

Summary

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Official Symbol
Vmn1r212provided by MGI
Official Full Name
vomeronasal 1 receptor 212provided by MGI
Primary source
MGI:MGI:2159683
See related
Ensembl:ENSMUSG00000071490 AllianceGenome:MGI:2159683
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rh18
Summary
Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
13 A3.1; 13 9.29 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (23067258..23068494, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (22883088..22884324, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor, pseudogene 116 Neighboring gene predicted gene, 23774 Neighboring gene vomeronasal 1 receptor, pseudogene 117 Neighboring gene vomeronasal 1 receptor Vmn1r-ps118 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
  2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
  3. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables pheromone receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
vomeronasal 1 receptor 212
Names
vomernasal 1 receptor Vmn1r212
vomeronasal 1 receptor, H18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134241.1 → NP_599002.1  vomeronasal 1 receptor 212

    See identical proteins and their annotated locations for NP_599002.1

    Status: PROVISIONAL

    Source sequence(s)
    AY065542
    Consensus CDS
    CCDS26327.1
    UniProtKB/TrEMBL
    Q8R268
    Related
    ENSMUSP00000093655.3, ENSMUST00000095960.5
    Conserved Domains (1) summary
    pfam03402
    Location:35 → 295
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    23067258..23068494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017315403.1 → XP_017170892.1  vomeronasal 1 receptor 212 isoform X1

    Conserved Domains (2) summary
    cd14964
    Location:38 → 64
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:38 → 318
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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