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Vmn1r21 vomeronasal 1 receptor 21 [ Mus musculus (house mouse) ]

Gene ID: 171201, updated on 8-Feb-2024

Summary

Official Symbol
Vmn1r21provided by MGI
Official Full Name
vomeronasal 1 receptor 21provided by MGI
Primary source
MGI:MGI:2159464
See related
Ensembl:ENSMUSG00000115343 AllianceGenome:MGI:2159464
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rc28
Summary
Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

Location:
6 B3; 6 27.82 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (57820549..57821442, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (57843564..57844457, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene LanC (bacterial lantibiotic synthetase component C)-like 2 Neighboring gene vesicular, overexpressed in cancer, prosurvival protein 1 Neighboring gene STARR-positive B cell enhancer ABC_E9272 Neighboring gene predicted gene, 25726 Neighboring gene vomeronasal 1 receptor, pseudogene 12

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables pheromone receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
vomeronasal 1 receptor 21
Names
vomernasal 1 receptor Vmn1r21
vomeronasal 1 receptor, C28
vomeronasal type 1 receptor C28

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134183.1NP_598944.1  vomeronasal 1 receptor 21

    See identical proteins and their annotated locations for NP_598944.1

    Status: PROVISIONAL

    Source sequence(s)
    AY065484
    Consensus CDS
    CCDS20186.1
    UniProtKB/TrEMBL
    A0A0N4SV70, A0A0N4SW70, F6MAV8, F6MAW1, Q8R2C6
    Related
    ENSMUSP00000154295.2, ENSMUST00000226191.2
    Conserved Domains (1) summary
    pfam03402
    Location:33293
    V1R; Vomeronasal organ pheromone receptor family, V1R

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    57820549..57821442 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)