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Vmn1r4 vomeronasal 1 receptor 4 [ Mus musculus (house mouse) ]

Gene ID: 171194, updated on 8-Feb-2024

Summary

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Official Symbol
Vmn1r4provided by MGI
Official Full Name
vomeronasal 1 receptor 4provided by MGI
Primary source
MGI:MGI:2159457
See related
Ensembl:ENSMUSG00000071893 AllianceGenome:MGI:2159457
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
V1rc21; C230065D10Rik
Summary
Predicted to enable pheromone binding activity and pheromone receptor activity. Predicted to act upstream of or within response to pheromone. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Vmn1r4 in Genome Data Viewer
Location:
6 B3; 6 27.76 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (56901078..56934593)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (56923914..56957608)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15993 Neighboring gene FK506 binding protein 9 Neighboring gene 5'-nucleotidase, cytosolic III Neighboring gene STARR-seq mESC enhancer starr_15995 Neighboring gene predicted gene, 53332 Neighboring gene STARR-positive B cell enhancer ABC_E8830 Neighboring gene STARR-seq mESC enhancer starr_15996 Neighboring gene vomeronasal 1 receptor 5 Neighboring gene vomeronasal 1 receptor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Rodriguez I, et al. Nat Neurosci, 2002 Feb. PMID 11802169
  2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article
  3. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pheromone binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables pheromone receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
vomeronasal 1 receptor 4
Names
vomernasal 1 receptor Vmn1r4
vomeronasal 1 receptor, C21
vomeronasal type 1 receptor C21

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_134176.1 → NP_598937.1  vomeronasal 1 receptor 4

    See identical proteins and their annotated locations for NP_598937.1

    Status: PROVISIONAL

    Source sequence(s)
    AY065477
    Consensus CDS
    CCDS20172.1
    UniProtKB/TrEMBL
    F6MAP9, F6MAR5, Q8R2D3
    Related
    ENSMUSP00000094369.4, ENSMUST00000096612.4
    Conserved Domains (2) summary
    cd14964
    Location:5 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:5 → 294
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    56901078..56934593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165898.1 → XP_036021791.1  vomeronasal 1 receptor 4 isoform X1

    UniProtKB/TrEMBL
    F6MAP9, F6MAR5, Q8R2D3
    Related
    ENSMUSP00000135323.2, ENSMUST00000176838.2
    Conserved Domains (2) summary
    cd14964
    Location:5 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:5 → 294
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

  2. XM_006505672.2 → XP_006505735.1  vomeronasal 1 receptor 4 isoform X1

    See identical proteins and their annotated locations for XP_006505735.1

    UniProtKB/TrEMBL
    F6MAP9, F6MAR5, Q8R2D3
    Related
    ENSMUSP00000153919.2, ENSMUST00000227073.2
    Conserved Domains (2) summary
    cd14964
    Location:5 → 28
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:5 → 294
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

RNA

  1. XR_004942915.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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