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Krt14 keratin 14 [ Mus musculus (house mouse) ]

Gene ID: 16664, updated on 23-Apr-2024

Summary

Official Symbol
Krt14provided by MGI
Official Full Name
keratin 14provided by MGI
Primary source
MGI:MGI:96688
See related
Ensembl:ENSMUSG00000045545 AllianceGenome:MGI:96688
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
K14; CK-14; Krt1-14; Krt-1.14
Summary
This gene encodes a member of the keratin family, the most diverse group of intermediate filaments. This gene product, a type I keratin, is usually found as a heterotetramer with two keratin 5 molecules, a type II keratin. Together they form the cytoskeleton of epithelial cells. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2015]
Expression
Biased expression in stomach adult (RPKM 89.1), limb E14.5 (RPKM 80.1) and 6 other tissues See more
Orthologs
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Genomic context

Location:
11 63.43 cM; 11 D
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (100093988..100098336, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (100203162..100207510, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39022 Neighboring gene keratin 9 Neighboring gene STARR-seq mESC enhancer starr_30714 Neighboring gene type I keratin KA11P Neighboring gene transcription elongation factor B (SIII), polypeptide 2 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables keratin filament binding ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in epithelial cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in hair cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in intermediate filament bundle assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in intermediate filament organization IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within keratinocyte differentiation IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within response to radiation IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within stem cell differentiation IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in basal part of cell IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell periphery IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cornified envelope IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in intermediate filament ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular anatomical structure IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in keratin filament IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in keratin filament IDA
Inferred from Direct Assay
more info
PubMed 
located_in keratin filament ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
keratin, type I cytoskeletal 14
Names
cytokeratin 14
keratin complex 1, acidic, gene 14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001313956.1NP_001300885.1  keratin, type I cytoskeletal 14 isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame segment compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AA050376, AA562488, AA612291, AI893364, AL590873
    Conserved Domains (2) summary
    pfam00038
    Location:120370
    Filament; Intermediate filament protein
    cl19219
    Location:235345
    DUF342; Protein of unknown function (DUF342)
  2. NM_001313957.1NP_001300886.1  keratin, type I cytoskeletal 14 isoform 3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses an alternate first exon in place of that of variant 1. This difference causes translation initiation at a downstream AUG and results in an isoform (3) with a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AA499338, AA562488, AA612291, AA760592, AI893364, AL590873
    UniProtKB/Swiss-Prot
    Q61781
    Related
    ENSMUST00000137265.2
    Conserved Domains (1) summary
    pfam00038
    Location:1214
    Filament; Intermediate filament protein
  3. NM_016958.2NP_058654.1  keratin, type I cytoskeletal 14 isoform 1

    See identical proteins and their annotated locations for NP_058654.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AA499338, AA562488, AA612291, AA760592, AI893364, AL590873
    Consensus CDS
    CCDS25413.1
    UniProtKB/Swiss-Prot
    A2A4G4, Q61781, Q91VQ4, Q99LE0
    Related
    ENSMUSP00000007272.8, ENSMUST00000007272.8
    Conserved Domains (1) summary
    pfam00038
    Location:120431
    Filament; Intermediate filament protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    100093988..100098336 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)