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C16orf82 chromosome 16 open reading frame 82 [ Homo sapiens (human) ]

Gene ID: 162083, updated on 5-Mar-2024

Summary

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Official Symbol
C16orf82provided by HGNC
Official Full Name
chromosome 16 open reading frame 82provided by HGNC
Primary source
HGNC:HGNC:30755
See related
Ensembl:ENSG00000234186 AllianceGenome:HGNC:30755
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TNT
Orthologs
all
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Genomic context

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See C16orf82 in Genome Data Viewer
Location:
16p12.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (27066927..27069166)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (27343670..27345909)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (27078248..27080487)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371153 Neighboring gene uncharacterized LOC105371154 Neighboring gene MPRA-validated peak2534 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:27121316-27121864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:27121865-27122411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10609 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 38 Neighboring gene uncharacterized LOC105371155

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Homology

Clone Names

  • FLJ18616

General protein information

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Preferred Names
protein TNT

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145545.2 → NP_001139017.1  protein TNT

    Status: VALIDATED

    Source sequence(s)
    AC092725
    UniProtKB/TrEMBL
    A0A5F9ZHF3
    Related
    ENSP00000500329.2, ENST00000505035.3
    Conserved Domains (1) summary
    pfam15765
    Location:1 → 153
    DUF4694; Domain of unknown function (DUF4694)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    27066927..27069166
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    27343670..27345909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182831.1: Suppressed sequence

    Description
    NM_182831.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7Z2V1.1 GenPept UniProtKB/Swiss-Prot:Q7Z2V1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
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