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SP3P Sp3 transcription factor pseudogene [ Homo sapiens (human) ]

Gene ID: 160824, updated on 10-Oct-2023

Summary

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Official Symbol
SP3Pprovided by HGNC
Official Full Name
Sp3 transcription factor pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:35430
See related
AllianceGenome:HGNC:35430
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q31.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (89359753..89363283, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (88563847..88567377, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (90012007..90015537, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1047 Neighboring gene NANOG hESC enhancer GRCh37_chr13:89895215-89895716 Neighboring gene long intergenic non-protein coding RNA 440 Neighboring gene tripartite motif containing 60 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:89976834-89977393 Neighboring gene NANOG hESC enhancer GRCh37_chr13:90016648-90017149 Neighboring gene NANOG hESC enhancer GRCh37_chr13:90032206-90032789 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:90053092-90054291 Neighboring gene uncharacterized LOC107984621 Neighboring gene NANOG hESC enhancer GRCh37_chr13:90058380-90058922 Neighboring gene long intergenic non-protein coding RNA 1040

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Human transcription factor Sp3: genomic structure, identification of a processed pseudogene, and transcript analysis. Moran KM, et al. Gene, 2004 Oct 27. PMID 15474306
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_004748.5 

    Range
    101..3631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    89359753..89363283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    88563847..88567377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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