U.S. flag

An official website of the United States government

Igkc immunoglobulin kappa constant [ Mus musculus (house mouse) ]

Gene ID: 16071, updated on 9-Dec-2024

Summary

Official Symbol
Igkcprovided by MGI
Official Full Name
immunoglobulin kappa constantprovided by MGI
Primary source
MGI:MGI:96495
See related
Ensembl:ENSMUSG00000076609 IMGT/GENE-DB:IGKC; AllianceGenome:MGI:96495
Gene type
other
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Igk-C
Summary
Acts upstream of or within B cell differentiation. Predicted to be located in extracellular region and plasma membrane. Predicted to be part of IgG immunoglobulin complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and liver and biliary system. Orthologous to human IGKC (immunoglobulin kappa constant). [provided by Alliance of Genome Resources, Dec 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Igkc in Genome Data Viewer
Location:
6 C1; 6 32.04 cM
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (70703419..70703738)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (70726435..70726754)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa chain complex Neighboring gene STARR-positive B cell enhancer ABC_E9273 Neighboring gene STARR-positive B cell enhancer ABC_E11317 Neighboring gene STARR-positive B cell enhancer ABC_E11318 Neighboring gene STARR-positive B cell enhancer ABC_E2193 Neighboring gene STARR-positive B cell enhancer mm9_chr6:70694043-70694344 Neighboring gene STARR-positive B cell enhancer mm9_chr6:70702533-70702834 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:70712736-70712889 Neighboring gene STARR-seq mESC enhancer starr_16238 Neighboring gene STARR-positive B cell enhancer ABC_E6436 Neighboring gene predicted gene, 30211 Neighboring gene immunoglobulin kappa joining 4 Neighboring gene immunoglobulin kappa joining 5 Neighboring gene ribose 5-phosphate isomerase A

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

General gene information

Other Names

  • If kappa light chain
  • immunoglobulin kappa chain, constant region
  • immunoglobulin variable region
  • kappa light chain C_region

Clone Names

  • MGC118128

Gene Ontology Provided by MGI

Component Evidence Code Pubs
part_of IgG immunoglobulin complex  
part_of alpha-beta T cell receptor complex  
located_in extracellular region  
located_in plasma membrane  

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005612.1 

    Range
    3171455..3171774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    70703419..70703738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Loading
External link. Please review our privacy policy.