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LINC02603 long intergenic non-protein coding RNA 2603 [ Homo sapiens (human) ]

Gene ID: 158257, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02603provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2603provided by HGNC
Primary source
HGNC:HGNC:37186
See related
Ensembl:ENSG00000230262 AllianceGenome:HGNC:37186
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MIRLET7DHG
Expression
Ubiquitous expression in lung (RPKM 2.7), skin (RPKM 2.6) and 24 other tissues See more
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Genomic context

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Location:
9q22.32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (94176569..94259311, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (106344617..106427386, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (96938851..97021593, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene miRlet-7a-1/let-7f-1/let-7d cluster host gene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28628 Neighboring gene microRNA let-7a-1 Neighboring gene microRNA let-7f-1 Neighboring gene microRNA let-7d Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:96974681-96975243 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC124902332 Neighboring gene NANOG hESC enhancer GRCh37_chr9:97012845-97013355 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr9:97021099-97021744 and GRCh37_chr9:97021745-97022391 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:97022392-97023037 Neighboring gene zinc finger protein 169 Neighboring gene NANOG hESC enhancer GRCh37_chr9:97044568-97045069 Neighboring gene voltage dependent anion channel 1 pseudogene 11 Neighboring gene uncharacterized LOC105376154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:97080767-97081446 Neighboring gene NUT family member 2F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Identification of mammalian microRNA host genes and transcription units. Rodriguez A, et al. Genome Res, 2004 Oct. PMID 15364901, Free PMC Article
  2. Plasma microRNAs are associated with acute exacerbation in idiopathic pulmonary fibrosis. Min H, et al. Diagn Pathol, 2016 Nov 23. PMID 27881157, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • MIRLET7D host gene (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046163.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant:
    Source sequence(s)
    BC036695, BC045813, BX088742
    Related
    ENST00000416309.6

  2. NR_046165.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant:
    Source sequence(s)
    BC045813, BX088742
    Related
    ENST00000602602.3

  3. NR_160773.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL158152, AL691447
    Related
    ENST00000668497.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    94176569..94259311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    106344617..106427386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases