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FBXO16 F-box protein 16 [ Homo sapiens (human) ]

Gene ID: 157574, updated on 5-Mar-2024

Summary

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Official Symbol
FBXO16provided by HGNC
Official Full Name
F-box protein 16provided by HGNC
Primary source
HGNC:HGNC:13618
See related
Ensembl:ENSG00000214050 MIM:608519; AllianceGenome:HGNC:13618
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FBX16
Summary
This gene encodes a member of the F-box protein family, members of which are characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into three classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbx class. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]
Expression
Broad expression in thyroid (RPKM 3.3), brain (RPKM 2.1) and 21 other tissues See more
Orthologs
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Genomic context

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Location:
8p21.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (28428412..28490229, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (28706607..28768389, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (28285929..28347746, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:28203430-28203930 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:28205819-28206378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:28206379-28206938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:28216758-28217258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:28217259-28217759 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27167 Neighboring gene zinc finger protein 395 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:28222946-28223446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27168 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:28241577-28241751 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19054 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19055 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19056 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19057 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19058 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27169 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27170 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27171 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:28268555-28269173 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:28269174-28269793 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:28277089-28277305 Neighboring gene RNA, U6 small nuclear 178, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27173 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27174 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19060 Neighboring gene VISTA enhancer hs1329 Neighboring gene frizzled class receptor 3 Neighboring gene microRNA 4288 Neighboring gene RNA, 5S ribosomal pseudogene 259

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Attenuation of Tumor Suppressive Function of FBXO16 Ubiquitin Ligase Activates Wnt Signaling In Glioblastoma. Khan M, et al. Neoplasia, 2019 Jan. PMID 30530053, Free PMC Article
  2. cDNA cloning and expression analysis of a novel human F-box only protein. Cheng H, et al. Mol Cells, 2002 Aug 31. PMID 12243353
  3. FBXO16-mediated hnRNPL ubiquitination and degradation plays a tumor suppressor role in ovarian cancer. Ji M, et al. Cell Death Dis, 2021 Jul 31. PMID 34333526, Free PMC Article
  4. F-box protein FBXO16 functions as a tumor suppressor by attenuating nuclear β-catenin function. Paul D, et al. J Pathol, 2019 Jul. PMID 30714168, Free PMC Article
  5. The ULK1-FBXW5-SEC23B nexus controls autophagy. Jeong YT, et al. Elife, 2018 Dec 31. PMID 30596474, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. FBXO16-mediated hnRNPL ubiquitination and degradation plays a tumor suppressor role in ovarian cancer.
    Title: FBXO16-mediated hnRNPL ubiquitination and degradation plays a tumor suppressor role in ovarian cancer.
  2. that FBXO16 functions as a putative tumor suppressor by forming an SCF(FBXO16) complex that targets nuclear beta-catenin in a unique manner for ubiquitination and subsequent proteasomal degradation to prevent malignancy
    Title: F-box protein FBXO16 functions as a tumor suppressor by attenuating nuclear β-catenin function.
  3. we show that due to low expression of FBXO16, the beta-catenin is not targeted in glioma cells leading to its nuclear accumulation resulting in active Wnt signaling. Activated Wnt signaling potentiates the glioma cells toward a highly proliferative and malignant state.
    Title: Attenuation of Tumor Suppressive Function of FBXO16 Ubiquitin Ligase Activates Wnt Signaling In Glioblastoma.
  4. FBXO16 was localized to the human chromosome 8p12. The FBXO16 gene consisted of 9 exons that spanned 67,816 bp of human genomic DNA
    Title: cDNA cloning and expression analysis of a novel human F-box only protein.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Potential readthrough

Included gene: ZNF395

Homology

Clone Names

  • MGC125923, MGC125924, MGC125925

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
F-box only protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001258211.2 → NP_001245140.1  F-box only protein 16 isoform 2

    See identical proteins and their annotated locations for NP_001245140.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting protein (isoform 2) is shorter compared to isoform 1.
    Source sequence(s)
    AA765256, AC025871, BC102028
    Consensus CDS
    CCDS59099.1
    UniProtKB/TrEMBL
    J3KNU2
    Related
    ENSP00000429687.1, ENST00000518734.5
    Conserved Domains (1) summary
    pfam12937
    Location:80 → 123
    F-box-like; F-box-like

  2. NM_172366.4 → NP_758954.1  F-box only protein 16 isoform 1

    See identical proteins and their annotated locations for NP_758954.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AC025871, AF453435, CB134505
    Consensus CDS
    CCDS6068.1
    UniProtKB/Swiss-Prot
    Q3T1B2, Q3T1B3, Q3T1B4, Q8IX29
    UniProtKB/TrEMBL
    J3KNU2
    Related
    ENSP00000369604.2, ENST00000380254.7
    Conserved Domains (1) summary
    pfam12937
    Location:92 → 129
    F-box-like; F-box-like

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    28428412..28490229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    28706607..28768389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8IX29.1 GenPept UniProtKB/Swiss-Prot:Q8IX29

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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