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CYCSP55 CYCS pseudogene 55 [ Homo sapiens (human) ]

Gene ID: 157317, updated on 10-Oct-2023

Summary

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Official Symbol
CYCSP55provided by HGNC
Official Full Name
CYCS pseudogene 55provided by HGNC
Primary source
HGNC:HGNC:21252
See related
AllianceGenome:HGNC:21252
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HS11; HCP15; CYCSL1; bA513I15.3
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Genomic context

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Location:
6p21.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (34219372..34220937)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (34043097..34044666)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (34187149..34188714)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33993583-33994310 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33999095-33999617 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24375 Neighboring gene glutamate metabotropic receptor 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:34015538-34016092 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:34016093-34016646 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:34016647-34017200 Neighboring gene Sharpr-MPRA regulatory region 5466 Neighboring gene Sharpr-MPRA regulatory region 4098 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34031248-34031829 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:34044839-34045669 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:34046709-34047454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:34050139-34050978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:34050979-34051818 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:34074290-34074790 Neighboring gene MPRA-validated peak5759 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34087978-34088766 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34099315-34100141 Neighboring gene Sharpr-MPRA regulatory region 15272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:34121411-34122268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24376 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24377 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24379 Neighboring gene keratin 18 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17060 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17061 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34193929-34194744 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34196972-34197516 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34202091-34202714 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34202715-34203338 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34203339-34203962 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:34203963-34204584 Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17067 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17069 Neighboring gene microRNA 6835 Neighboring gene high mobility group AT-hook 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human somatic cytochrome c gene: two classes of processed pseudogenes demarcate a period of rapid molecular evolution. Evans MJ, et al. Proc Natl Acad Sci U S A, 1988 Dec. PMID 2849112, Free PMC Article
  2. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Zhang Z, et al. Gene, 2003 Jul 17. PMID 12909341

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • cytochrome c, somatic pseudogene 55
  • cytochrome c, somatic-like 1 (pseudogene)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007352.1 

    Range
    101..1666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    34219372..34220937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    34043097..34044666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_001561.1: Suppressed sequence

    Description
    NR_001561.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is not transcribed.
Nucleotide Protein
Heading Accession and Version

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