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CYP2D8P ccytochrome P450 family 2 subfamily D member 8, pseudogene [ Homo sapiens (human) ]

Gene ID: 1568, updated on 8-Nov-2023

Summary

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Official Symbol
CYP2D8Pprovided by HGNC
Official Full Name
ccytochrome P450 family 2 subfamily D member 8, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:2628
See related
Ensembl:ENSG00000226450 AllianceGenome:HGNC:2628
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CYP2DP1; CYP2D8P1
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Genomic context

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Location:
22q13.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (42149883..42155016, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (42629363..42634514, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (42545874..42551022, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377203 Neighboring gene cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene) Neighboring gene transcription factor 20 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42610989-42611488 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:42613759-42614347 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19154 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19155 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13822 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13821 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13820 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13823 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42670872-42671668 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr22:42671669-42672465 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19156 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42678224-42679074 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42679075-42679924 Neighboring gene opioid growth factor receptor pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42690639-42691452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42693767-42694412 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42695786-42696464 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42696465-42697143 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42697144-42697822 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42706428-42707134 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42709047-42709876 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42710708-42711537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42714279-42715176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42716129-42716966 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42721410-42722037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42734449-42735057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42735333-42735954 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42735955-42736576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42747603-42748103 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42759143-42759796 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42761307-42762149 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:42763534-42764468 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19161 Neighboring gene long intergenic non-protein coding RNA 1315

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The human debrisoquine 4-hydroxylase (CYP2D) locus: sequence and identification of the polymorphic CYP2D6 gene, a related gene, and a pseudogene. Kimura S, et al. Am J Hum Genet, 1989 Dec. PMID 2574001, Free PMC Article
  2. Comparison of cytochrome P450 (CYP) genes from the mouse and human genomes, including nomenclature recommendations for genes, pseudogenes and alternative-splice variants. Nelson DR, et al. Pharmacogenetics, 2004 Jan. PMID 15128046

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • cytochrome P450, family 2, subfamily D, polypeptide 8 pseudogene 1
  • cytochrome P450, family 2, subfamily D, polypeptide 8, pseudogene
  • cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolizing), polypeptide 8 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000854.4 

    Range
    101..5234
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    42149883..42155016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_009646207.1 Reference GRCh38.p14 PATCHES

    Range
    52672..57820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_009646208.1 Reference GRCh38.p14 PATCHES

    Range
    49172..54305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_014040930.1 Reference GRCh38.p14 PATCHES

    Range
    52069..57202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_014040931.1 Reference GRCh38.p14 PATCHES

    Range
    70892..76027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_015148968.1 Reference GRCh38.p14 PATCHES

    Range
    41302..46437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315971.2 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    60076..65210 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_187682.1 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    72213..77361 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    42629363..42634514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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