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Hspa4 heat shock protein 4 [ Mus musculus (house mouse) ]

Gene ID: 15525, updated on 18-Apr-2024

Summary

Official Symbol
Hspa4provided by MGI
Official Full Name
heat shock protein 4provided by MGI
Primary source
MGI:MGI:1342292
See related
Ensembl:ENSMUSG00000020361 AllianceGenome:MGI:1342292
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
70kDa; APG-2; Hsp110; Hsp70RY; mKIAA4025
Summary
Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity. Predicted to be involved in several processes, including chaperone-mediated protein complex assembly; negative regulation of macromolecule metabolic process; and protein insertion into mitochondrial outer membrane. Predicted to be located in cytoplasm; extracellular exosome; and lipid droplet. Predicted to be active in cytosol and nucleus. Is expressed in early tubule; female associated reproductive structure; male associated reproductive structure; ovary; and testis. Human ortholog(s) of this gene implicated in Chagas disease. Orthologous to human HSPA4 (heat shock protein family A (Hsp70) member 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 44.3), adrenal adult (RPKM 30.6) and 28 other tissues See more
Orthologs
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Genomic context

Location:
11 B1.3; 11 31.91 cM
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (53150641..53191306, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (53259814..53300479, complement)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene follistatin-like 4 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52942269-52942487 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:52946269-52946452 Neighboring gene predicted gene 11186 Neighboring gene STARR-seq mESC enhancer starr_29473 Neighboring gene STARR-seq mESC enhancer starr_29474 Neighboring gene TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene Neighboring gene STARR-seq mESC enhancer starr_29475 Neighboring gene STARR-seq mESC enhancer starr_29476 Neighboring gene STARR-positive B cell enhancer ABC_E2987 Neighboring gene STARR-seq mESC enhancer starr_29480 Neighboring gene predicted gene, 30525 Neighboring gene zinc finger, CCHC domain containing 10

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA4025

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II-specific DNA-binding transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
enables adenyl-nucleotide exchange factor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in chaperone-mediated protein complex assembly ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in neuron apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in protein folding IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in protein insertion into mitochondrial outer membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of microglial cell activation ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
located_in lipid droplet ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
heat shock 70 kDa protein 4
Names
heat shock 70-related protein APG-2
heat shock protein, 110 kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008300.3NP_032326.3  heat shock 70 kDa protein 4

    See identical proteins and their annotated locations for NP_032326.3

    Status: VALIDATED

    Source sequence(s)
    AA203833, AI316935, AL596382, AW545353, CA316420, CF741432, CN458707
    Consensus CDS
    CCDS24674.1
    UniProtKB/Swiss-Prot
    Q61316
    UniProtKB/TrEMBL
    Q3U2G2
    Related
    ENSMUSP00000020630.8, ENSMUST00000020630.8
    Conserved Domains (2) summary
    cd11737
    Location:2384
    HSPA4_NBD; Nucleotide-binding domain of HSPA4
    pfam00012
    Location:3609
    HSP70; Hsp70 protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    53150641..53191306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)