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RTN3P1 reticulon 3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 152905, updated on 10-Oct-2023

Summary

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Official Symbol
RTN3P1provided by HGNC
Official Full Name
reticulon 3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:19212
See related
AllianceGenome:HGNC:19212
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NSPLII; RTN3PS
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Genomic context

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See RTN3P1 in Genome Data Viewer
Location:
4q31.21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (145375406..145377957)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (148692863..148695417)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (146296558..146299109)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S23 pseudogene 4 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:146220501-146221700 Neighboring gene long intergenic non-protein coding RNA 2266 Neighboring gene NMNAT1 pseudogene 4 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15727 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15729 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15730 Neighboring gene SMAD family member 1 Neighboring gene SMAD1 antisense RNA 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning of a novel member of the reticulon gene family (RTN3): gene structure and chromosomal localization to 11q13. Moreira EF, et al. Genomics, 1999 May 15. PMID 10331947
  2. A reticular rhapsody: phylogenic evolution and nomenclature of the RTN/Nogo gene family. Oertle T, et al. FASEB J, 2003 Jul. PMID 12832288

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • 2NSP-like protein II

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_005175.4 

    Range
    101..2652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    145375406..145377957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    148692863..148695417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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