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LINC01107 long intergenic non-protein coding RNA 1107 [ Homo sapiens (human) ]

Gene ID: 151171, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01107provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1107provided by HGNC
Primary source
HGNC:HGNC:49229
See related
Ensembl:ENSG00000225493 AllianceGenome:HGNC:49229
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.1) See more
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Genomic context

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Location:
2q37.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (238510690..238555499, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (239000787..239045598, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (239419331..239464140, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17383 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:239347665-239348864 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239349077-239349578 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239349579-239350078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239358923-239359430 Neighboring gene uncharacterized LOC107986003 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239359431-239359936 Neighboring gene zinc finger protein 256 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:239363467-239363967 Neighboring gene ankyrin repeat and SOCS box containing 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239417633-239418320 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239418321-239419006 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:239426272-239427471 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239431154-239432062 Neighboring gene uncharacterized LOC124906130 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239464607-239465108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239508477-239508992 Neighboring gene MPRA-validated peak4103 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239547211-239547712 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:239565991-239566613 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:239592463-239593662 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239605714-239606214 Neighboring gene uncharacterized LOC105373963 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:239639105-239639604 Neighboring gene long intergenic non-protein coding RNA 1937

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • AC092619.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037809.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092619
    Related
    ENST00000446979.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    238510690..238555499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    239000787..239045598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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