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ZDHHC8BP ZDHHC8B, pseudogene [ Homo sapiens (human) ]

Gene ID: 150244, updated on 10-Oct-2023

Summary

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Official Symbol
ZDHHC8BPprovided by HGNC
Official Full Name
ZDHHC8B, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:26461
See related
Ensembl:ENSG00000290920 AllianceGenome:HGNC:26461
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZDHHC8P; ZDHHC8P1
Expression
Biased expression in prostate (RPKM 14.9), ovary (RPKM 11.3) and 3 other tissues See more
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Genomic context

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Location:
22q11.23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23390605..23402612, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23813358..23825364, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (23732792..23744799, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2556 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:23709276-23710010 Neighboring gene carboxylesterase 5A pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23728238-23729220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23730785-23731642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23735088-23735588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23741087-23741641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23741731-23742504 Neighboring gene coiled-coil domain containing 188B, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23758527-23759161 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:23773427-23774272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23777839-23778530 Neighboring gene long intergenic non-protein coding RNA 1659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23792825-23793326 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23793873-23794519 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:23802568-23803102 Neighboring gene family with sequence similarity 230 member I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LncRNA-ZDHHC8P1 promotes the progression and metastasis of colorectal cancer by targeting miR-34a. Li C, et al. Eur Rev Med Pharmacol Sci, 2019 Feb. PMID 30840269
  2. Generation and analysis of 280,000 human expressed sequence tags. Hillier LD, et al. Genome Res, 1996 Sep. PMID 8889549
  3. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Knockdown of ZDHHC8P1 decrease the proliferation ability in both cell lines and decreased the expression of cyclin D1.
    Title: LncRNA-ZDHHC8P1 promotes the progression and metastasis of colorectal cancer by targeting miR-34a.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ZDHHC8 pseudogene 1
  • zinc finger DHHC-type containing 8 pseudogene 1
  • zinc finger, DHHC-type containing 8 pseudogene

Clone Names

  • FLJ31568, MGC126046, MGC126047

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003950.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA126252, AK056130, AP000344, CK902416, CN269046, DA485168
    Related
    ENST00000692963.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    23390605..23402612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187632.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    36563..48570 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    23813358..23825364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152509.1: Suppressed sequence

    Description
    NM_152509.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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