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NCOR1P1 NCOR1 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 149934, updated on 10-Oct-2023

Summary

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Official Symbol
NCOR1P1provided by HGNC
Official Full Name
NCOR1 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:16724
See related
Ensembl:ENSG00000290409 AllianceGenome:HGNC:16724
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf191; bB329D4.2
Summary
Predicted to enable thyroid hormone receptor binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See NCOR1P1 in Genome Data Viewer
Location:
20p11.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (26103416..26114041, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (26107136..26117801, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (26084052..26094677, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:25990245-25990864 Neighboring gene uncharacterized LOC100134868 Neighboring gene family with sequence similarity 182 member A Neighboring gene BSND pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:26141485-26142120 Neighboring gene MIR663A host gene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26188387-26188888 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:26189772-26190332 Neighboring gene microRNA 663a Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26214685-26215184 Neighboring gene uncharacterized LOC124904967

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The DNA sequence and comparative analysis of human chromosome 20. Deloukas P, et al. Nature, 2001 Dec 20-27. PMID 11780052
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • nuclear receptor co-repressor 1 pseudogene
  • nuclear receptor corepressor 1 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003678.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC132806, EH318080
    Related
    ENST00000478176.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    26103416..26114041 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    26107136..26117801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039379.1: Suppressed sequence

    Description
    NM_001039379.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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