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KRT17P1 keratin 17 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 147228, updated on 10-Oct-2023

Summary

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Official Symbol
KRT17P1provided by HGNC
Official Full Name
keratin 17 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:6428
See related
AllianceGenome:HGNC:6428
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
17p11.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (16840787..16845872, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (16786542..16791959, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (16744101..16749186, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene keratin 16 pseudogene 6 Neighboring gene uncharacterized LOC105371552 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16734092-16734602 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16735814-16736326 Neighboring gene uncharacterized LOC105371551 Neighboring gene keratin 16 pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16737352-16737864 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16738378-16738890 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16738891-16739402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16743553-16744102 Neighboring gene distal SMS-REP block C recombination region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16748284-16749150 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:16749151-16750015 Neighboring gene keratin 17 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16756688-16757188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:16757189-16757689 Neighboring gene COTL1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Characterization of the human gene encoding cytokeratin 17 and its expression pattern. Troyanovsky SM, et al. Eur J Cell Biol, 1992 Oct. PMID 1281771
  2. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs. Park SS, et al. Genome Res, 2002 May. PMID 11997339, Free PMC Article
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146392.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022596

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    16840787..16845872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    16786542..16791959 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002775.5: Suppressed sequence

    Description
    NG_002775.5: This RefSeq was removed because it is now thought that this locus is transcribed.

  2. NM_001349721.1: Suppressed sequence

    Description
    NM_001349721.1: This RefSeq was removed because currently there is insufficient evidence for the protein.
Nucleotide Protein
Heading Accession and Version

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