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LINC02691 long intergenic non-protein coding RNA 2691 [ Homo sapiens (human) ]

Gene ID: 145195, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02691provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2691provided by HGNC
Primary source
HGNC:HGNC:20358
See related
Ensembl:ENSG00000258913 AllianceGenome:HGNC:20358
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf144
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Genomic context

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See LINC02691 in Genome Data Viewer
Location:
14q32.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (104223584..104288069)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (98462868..98529348)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (104689921..104754406)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene KIF26A divergent transcript Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104614982-104615497 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104617559-104618072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104620618-104621118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104621119-104621619 Neighboring gene kinesin family member 26A Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104635187-104635899 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104638041-104638754 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104645533-104646067 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104655181-104656014 Neighboring gene uncharacterized LOC124903393 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104688883-104689775 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104703975-104704476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104705328-104706173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104706174-104707018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104736421-104737106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104737107-104737791 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:104745688-104745903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104757333-104758315 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104759505-104760173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104760174-104760841 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:104761156-104761847 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104763231-104763920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104768907-104769408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104801365-104801866 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104808523-104809136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104836443-104836944 Neighboring gene uncharacterized LOC124903394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:104853417-104853918 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9114 Neighboring gene RNA, U6 small nuclear 684, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146611.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL590079, BC007749, BF309232, DA370484

  2. NR_146612.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks the 3' exon and contains two alternate exons, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    AL512357, DA370484
    Related
    ENST00000553757.1

  3. NR_146613.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks the 3' exon and contains an alternate 3' exon, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    DA370484, DA864497
    Related
    ENST00000556528.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    104223584..104288069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    98462868..98529348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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