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Gabpb1 GA repeat binding protein, beta 1 [ Mus musculus (house mouse) ]

Gene ID: 14391, updated on 3-Apr-2024

Summary

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Official Symbol
Gabpb1provided by MGI
Official Full Name
GA repeat binding protein, beta 1provided by MGI
Primary source
MGI:MGI:95611
See related
Ensembl:ENSMUSG00000027361 AllianceGenome:MGI:95611
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E4TF1; GABPB; BABPB2; E4Tf1B; NRF2B1; NRF2B2; GABPB-1; GABPB-2; E4TF1-47; E4TF1-53; GABPB1-1; GABPB1-2
Summary
Predicted to enable transcription cis-regulatory region binding activity. Involved in mitochondrion organization. Predicted to be located in cytoplasmic ribonucleoprotein granule and nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; genitourinary system; and limb. Orthologous to human GABPB1 (GA binding protein transcription factor subunit beta 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 6.0), limb E14.5 (RPKM 4.8) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Gabpb1 in Genome Data Viewer
Location:
2 F1; 2 61.76 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (126470832..126527184, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (126628907..126684435, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05606 Neighboring gene solute carrier family 27 (fatty acid transporter), member 2 Neighboring gene STARR-positive B cell enhancer ABC_E11157 Neighboring gene histidine decarboxylase Neighboring gene zinc finger, BED domain containing 4 pseudogene Neighboring gene RIKEN cDNA A630026N12 gene Neighboring gene STARR-seq mESC enhancer starr_05607 Neighboring gene STARR-seq mESC enhancer starr_05610 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide L pseudogene Neighboring gene ubiquitin specific peptidase 8 Neighboring gene ubiquitin specific peptidase 50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Targeting tetramer-forming GABPβ isoforms impairs self-renewal of hematopoietic and leukemic stem cells. Yu S, et al. Cell Stem Cell, 2012 Aug 3. PMID 22862946, Free PMC Article
  2. Naïve CD4+ T cells of Peyer's patches produce more IL-6 than those of spleen in response to antigenic stimulation. Hashiguchi M, et al. Immunol Lett, 2011 Dec 30. PMID 21944889
  3. Identification and expression analysis of alternative transcripts of the mouse GA-binding protein (Gabp) subunits alpha and beta1. O'Leary DA, et al. Gene, 2005 Jan 3. PMID 15656975
  4. Identification of Ets- and notch-related subunits in GA binding protein. LaMarco K, et al. Science, 1991 Aug 16. PMID 1876836
  5. The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA. Batchelor AH, et al. Science, 1998 Feb 13. PMID 9461436

See all (37) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Incomplete activation of Alyref and Gabpb1 leads to preimplantation arrest in cloned mouse embryos.
    Title: Incomplete activation of Alyref and Gabpb1 leads to preimplantation arrest in cloned mouse embryos.
  2. SIRT7 stabilizes and activates the GABP alpha/GABPbeta complex via deacetylation of GABPbeta1.
    Title: A SIRT7-dependent acetylation switch of GABPβ1 controls mitochondrial function.
  3. The findings identify the tetramer-forming GABPbeta1 as specific HSC regulators and potential therapeutic targets in treating LSC-based hematological malignancy.
    Title: Targeting tetramer-forming GABPβ isoforms impairs self-renewal of hematopoietic and leukemic stem cells.
  4. After antigenic stimulation CD4+/CD62Lhigh cells from Peyer's patches express a greater amount of transcripts of GA-binding protein beta subunit 1 than those from the spleen.
    Title: Naïve CD4+ T cells of Peyer's patches produce more IL-6 than those of spleen in response to antigenic stimulation.
  5. GABPbeta1S has a critical role in maintaining the transcriptional activity of the GABPalpha/beta complex.
    Title: Targeting the GA binding protein beta1L isoform does not perturb lymphocyte development and function.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (1) 

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transcription cis-regulatory region binding ISO
Inferred from Sequence Orthology
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrion organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 PubMed 

General protein information

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Preferred Names
GA-binding protein subunit beta-1
Names
GA binding protein subunit beta1
GABP subunit beta-1
GABP subunit beta-2
Gabp beta1
NP_001258396.1
NP_001258397.1
NP_001258398.1
NP_001258399.1
NP_001258421.1
NP_001342037.1
NP_001342038.1
NP_001393121.1
NP_001393122.1
NP_001393123.1
NP_001393124.1
NP_001393125.1
NP_001393126.1
NP_001393127.1
NP_001393128.1
NP_001393129.1
NP_001393130.1
NP_001393131.1
NP_001393132.1
NP_001393133.1
NP_001393134.1
NP_001393135.1
NP_001393136.1
NP_001393137.1
NP_001393138.1
NP_001393139.1
NP_001393140.1
NP_001393141.1
NP_001393142.1
NP_001393143.1
NP_001393144.1
NP_001393145.1
NP_001393146.1
NP_001393147.1
NP_001393148.1
NP_001393149.1
NP_001393150.1
NP_001393151.1
NP_001393152.1
NP_001393153.1
NP_001393154.1
NP_001393155.1
NP_001393156.1
NP_034379.1
NP_997552.1
XP_006498819.1
XP_006498824.1
XP_030103388.1
XP_036014243.1
XP_036014249.1
XP_036014264.1
XP_036014265.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271467.2 → NP_001258396.1  GA-binding protein subunit beta-1 isoform a

    See identical proteins and their annotated locations for NP_001258396.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Both variants 1 and 4 encode the same isoform (a).
    Source sequence(s)
    AL844555
    Consensus CDS
    CCDS16685.1
    UniProtKB/TrEMBL
    Q3UJN3, Q3US22
    Related
    ENSMUSP00000099517.2, ENSMUST00000103227.8
    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam16312
    Location:315 → 369
    Oberon_cc; Coiled-coil region of Oberon

  2. NM_001271468.2 → NP_001258397.1  GA-binding protein subunit beta-1 isoform d

    See identical proteins and their annotated locations for NP_001258397.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) uses an alternate in-frame splice site in the coding region compared to variant 1. It encodes isoform d which has one additional amino acid compared to isoform a.
    Source sequence(s)
    AL844555
    Consensus CDS
    CCDS71137.1
    UniProtKB/Swiss-Prot
    A2AQ68, A2AQ70, Q00420, Q00421, Q8BS31, Q91YZ0, Q9QVV2
    UniProtKB/TrEMBL
    Q3UJN3
    Related
    ENSMUSP00000106055.3, ENSMUST00000110425.9
    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam16312
    Location:316 → 370
    Oberon_cc; Coiled-coil region of Oberon

  3. NM_001271469.2 → NP_001258398.1  GA-binding protein subunit beta-1 isoform f

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks several alternate in-frame exons in the coding region compared to variant 1. The resulting protein (isoform f) uses the same start codon but is shorter than isoform a. PubMed ID: 15656975 suggests that this protein lacks a nuclear localization signal found in isoform a.
    Source sequence(s)
    AL844555
    UniProtKB/TrEMBL
    Q6WJ10
    Conserved Domains (2) summary
    sd00045
    Location:10 → 35
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:10 → 92
    Ank_2; Ankyrin repeats (3 copies)

  4. NM_001271470.2 → NP_001258399.1  GA-binding protein subunit beta-1 isoform e

    See identical proteins and their annotated locations for NP_001258399.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR and uses an alternate 3' terminal exon compared to variant 1. The resulting protein (isoform e) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AL844555
    Consensus CDS
    CCDS71136.1
    UniProtKB/TrEMBL
    Q3UJN3, Q3UT69
    Related
    ENSMUSP00000037673.7, ENSMUST00000039978.13
    Conserved Domains (4) summary
    cd00204
    Location:34 → 156
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]

  5. NM_001271492.1 → NP_001258421.1  GA-binding protein subunit beta-1 isoform c

    See identical proteins and their annotated locations for NP_001258421.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 3' terminal exon compared to variant 1. The resulting protein (isoform c) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AK040722, AL844555
    Consensus CDS
    CCDS71135.1
    UniProtKB/Swiss-Prot
    Q00420
    Related
    ENSMUSP00000087177.5, ENSMUST00000089745.11
    Conserved Domains (4) summary
    cd00204
    Location:34 → 156
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]

  6. NM_001355108.2 → NP_001342037.1  GA-binding protein subunit beta-1 isoform g

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/TrEMBL
    Q3UJN3
    Conserved Domains (3) summary
    sd00045
    Location:10 → 35
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:10 → 92
    Ank_2; Ankyrin repeats (3 copies)
    cl03075
    Location:259 → 306
    GrpE; nucleotide exchange factor GrpE

  7. NM_001355109.2 → NP_001342038.1  GA-binding protein subunit beta-1 isoform h

    Status: VALIDATED

    Source sequence(s)
    AL844555
    Conserved Domains (2) summary
    cd00204
    Location:34 → 156
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]

  8. NM_001406192.1 → NP_001393121.1  GA-binding protein subunit beta-1 isoform a

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/TrEMBL
    Q3US22

  9. NM_001406193.1 → NP_001393122.1  GA-binding protein subunit beta-1 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL844555

  10. NM_001406194.1 → NP_001393123.1  GA-binding protein subunit beta-1 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL844555

  11. NM_001406195.1 → NP_001393124.1  GA-binding protein subunit beta-1 isoform x

    Status: VALIDATED

    Source sequence(s)
    AL844555

  12. NM_001406196.1 → NP_001393125.1  GA-binding protein subunit beta-1 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL844555

  13. NM_001406197.1 → NP_001393126.1  GA-binding protein subunit beta-1 isoform d

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/Swiss-Prot
    A2AQ68, A2AQ70, Q00420, Q00421, Q8BS31, Q91YZ0, Q9QVV2

  14. NM_001406198.1 → NP_001393127.1  GA-binding protein subunit beta-1 isoform d

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/Swiss-Prot
    A2AQ68, A2AQ70, Q00420, Q00421, Q8BS31, Q91YZ0, Q9QVV2

  15. NM_001406199.1 → NP_001393128.1  GA-binding protein subunit beta-1 isoform d

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/Swiss-Prot
    A2AQ68, A2AQ70, Q00420, Q00421, Q8BS31, Q91YZ0, Q9QVV2

  16. NM_001406200.1 → NP_001393129.1  GA-binding protein subunit beta-1 isoform d

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/Swiss-Prot
    A2AQ68, A2AQ70, Q00420, Q00421, Q8BS31, Q91YZ0, Q9QVV2

  17. NM_001406201.1 → NP_001393130.1  GA-binding protein subunit beta-1 isoform e

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/TrEMBL
    Q3UT69

  18. NM_001406202.1 → NP_001393131.1  GA-binding protein subunit beta-1 isoform e

    Status: VALIDATED

    Source sequence(s)
    AL844555
    UniProtKB/TrEMBL
    Q3UT69

  19. NM_001406203.1 → NP_001393132.1  GA-binding protein subunit beta-1 isoform g

    Status: VALIDATED

    Source sequence(s)
    AL844555

  20. NM_001406204.1 → NP_001393133.1  GA-binding protein subunit beta-1 isoform g

    Status: VALIDATED

    Source sequence(s)
    AL844555

  21. NM_001406205.1 → NP_001393134.1  GA-binding protein subunit beta-1 isoform g

    Status: VALIDATED

    Source sequence(s)
    AL844555

  22. NM_001406206.1 → NP_001393135.1  GA-binding protein subunit beta-1 isoform h

    Status: VALIDATED

    Source sequence(s)
    AL844555

  23. NM_001406207.1 → NP_001393136.1  GA-binding protein subunit beta-1 isoform i

    Status: VALIDATED

    Source sequence(s)
    AL844555

  24. NM_001406208.1 → NP_001393137.1  GA-binding protein subunit beta-1 isoform j

    Status: VALIDATED

    Source sequence(s)
    AL844555

  25. NM_001406209.1 → NP_001393138.1  GA-binding protein subunit beta-1 isoform k

    Status: VALIDATED

    Source sequence(s)
    AL844555

  26. NM_001406210.1 → NP_001393139.1  GA-binding protein subunit beta-1 isoform l

    Status: VALIDATED

    Source sequence(s)
    AL844555

  27. NM_001406211.1 → NP_001393140.1  GA-binding protein subunit beta-1 isoform m

    Status: VALIDATED

    Source sequence(s)
    AL844555

  28. NM_001406212.1 → NP_001393141.1  GA-binding protein subunit beta-1 isoform m

    Status: VALIDATED

    Source sequence(s)
    AL844555

  29. NM_001406213.1 → NP_001393142.1  GA-binding protein subunit beta-1 isoform m

    Status: VALIDATED

    Source sequence(s)
    AL844555

  30. NM_001406214.1 → NP_001393143.1  GA-binding protein subunit beta-1 isoform n

    Status: VALIDATED

    Source sequence(s)
    AL844555

  31. NM_001406215.1 → NP_001393144.1  GA-binding protein subunit beta-1 isoform o

    Status: VALIDATED

    Source sequence(s)
    AL844555

  32. NM_001406216.1 → NP_001393145.1  GA-binding protein subunit beta-1 isoform p

    Status: VALIDATED

    Source sequence(s)
    AL844555

  33. NM_001406217.1 → NP_001393146.1  GA-binding protein subunit beta-1 isoform q

    Status: VALIDATED

    Source sequence(s)
    AL844555

  34. NM_001406218.1 → NP_001393147.1  GA-binding protein subunit beta-1 isoform q

    Status: VALIDATED

    Source sequence(s)
    AL844555

  35. NM_001406219.1 → NP_001393148.1  GA-binding protein subunit beta-1 isoform r

    Status: VALIDATED

    Source sequence(s)
    AL844555

  36. NM_001406220.1 → NP_001393149.1  GA-binding protein subunit beta-1 isoform s

    Status: VALIDATED

    Source sequence(s)
    AL844555

  37. NM_001406221.1 → NP_001393150.1  GA-binding protein subunit beta-1 isoform s

    Status: VALIDATED

    Source sequence(s)
    AL844555

  38. NM_001406222.1 → NP_001393151.1  GA-binding protein subunit beta-1 isoform t

    Status: VALIDATED

    Source sequence(s)
    AL844555

  39. NM_001406223.1 → NP_001393152.1  GA-binding protein subunit beta-1 isoform u

    Status: VALIDATED

    Source sequence(s)
    AL844555

  40. NM_001406224.1 → NP_001393153.1  GA-binding protein subunit beta-1 isoform y

    Status: VALIDATED

    Source sequence(s)
    AL844555

  41. NM_001406225.1 → NP_001393154.1  GA-binding protein subunit beta-1 isoform v

    Status: VALIDATED

    Source sequence(s)
    AL844555

  42. NM_001406226.1 → NP_001393155.1  GA-binding protein subunit beta-1 isoform w

    Status: VALIDATED

    Source sequence(s)
    AL844555

  43. NM_001406227.1 → NP_001393156.1  GA-binding protein subunit beta-1 isoform w

    Status: VALIDATED

    Source sequence(s)
    AL844555

  44. NM_010249.3 → NP_034379.1  GA-binding protein subunit beta-1 isoform b

    See identical proteins and their annotated locations for NP_034379.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) (also known as Gabp-beta-2, GABBP2, Gabp-beta-1-2, GABPbeta1S) uses an alternate 3' terminal exon compared to variant 1. The resulting protein (isoform b) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AL844555
    Consensus CDS
    CCDS16686.1
    UniProtKB/TrEMBL
    Q3UJN3
    Related
    ENSMUSP00000099516.4, ENSMUST00000103226.10
    Conserved Domains (4) summary
    cd00204
    Location:34 → 156
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]

  45. NM_207669.3 → NP_997552.1  GA-binding protein subunit beta-1 isoform a

    See identical proteins and their annotated locations for NP_997552.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) (also known as Gabp-beta-1, GABBP1, Gabp-beta-1-1, GABPbeta1L) encodes isoform a.
    Source sequence(s)
    AL844555
    Consensus CDS
    CCDS16685.1
    UniProtKB/TrEMBL
    Q3UJN3, Q3US22
    Related
    ENSMUSP00000106054.3, ENSMUST00000110424.9
    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam16312
    Location:315 → 369
    Oberon_cc; Coiled-coil region of Oberon

RNA

  1. NR_073183.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) lacks two internal exons and uses an alternate 3' terminal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AL844555

  2. NR_176024.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  3. NR_176025.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  4. NR_176026.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  5. NR_176027.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  6. NR_176028.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  7. NR_176029.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  8. NR_176030.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  9. NR_176031.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

  10. NR_176032.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL844555

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    126470832..126527184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158371.1 → XP_036014264.1  GA-binding protein subunit beta-1 isoform X15

    UniProtKB/TrEMBL
    Q6WJ09
    Conserved Domains (3) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)

  2. XM_036158350.1 → XP_036014243.1  GA-binding protein subunit beta-1 isoform X6

    UniProtKB/TrEMBL
    Q3UJN3
    Conserved Domains (3) summary
    sd00045
    Location:46 → 76
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:18 → 66
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:50 → 141
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_030247528.1 → XP_030103388.1  GA-binding protein subunit beta-1 isoform X13

    UniProtKB/TrEMBL
    Q6WJ09
    Conserved Domains (3) summary
    sd00045
    Location:46 → 76
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:50 → 141
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:18 → 66
    Ank_4; Ankyrin repeats (many copies)

  4. XM_036158372.1 → XP_036014265.1  GA-binding protein subunit beta-1 isoform X16

    Conserved Domains (2) summary
    sd00045
    Location:10 → 35
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:10 → 92
    Ank_2; Ankyrin repeats (3 copies)

  5. XM_006498761.5 → XP_006498824.1  GA-binding protein subunit beta-1 isoform X4

    See identical proteins and their annotated locations for XP_006498824.1

    UniProtKB/TrEMBL
    Q3UJN3, Q3US22
    Conserved Domains (4) summary
    sd00045
    Location:38 → 68
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:42 → 133
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:10 → 58
    Ank_4; Ankyrin repeats (many copies)
    pfam16312
    Location:315 → 369
    Oberon_cc; Coiled-coil region of Oberon

  6. XM_006498756.2 → XP_006498819.1  GA-binding protein subunit beta-1 isoform X2

    UniProtKB/TrEMBL
    Q3UJN3
    Conserved Domains (4) summary
    sd00045
    Location:46 → 76
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:50 → 141
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:18 → 66
    Ank_4; Ankyrin repeats (many copies)
    pfam16312
    Location:323 → 377
    Oberon_cc; Coiled-coil region of Oberon

  7. XM_036158356.1 → XP_036014249.1  GA-binding protein subunit beta-1 isoform X10

    UniProtKB/TrEMBL
    Q3UJN3
    Conserved Domains (3) summary
    sd00045
    Location:10 → 35
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:10 → 92
    Ank_2; Ankyrin repeats (3 copies)
    pfam16312
    Location:250 → 304
    Oberon_cc; Coiled-coil region of Oberon
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q00420.2 GenPept UniProtKB/Swiss-Prot:Q00420

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